Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40553
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0684 + 6009474-6009582,6009715-6009904,6011412-6011483,601... 31 1.1
12_02_0088 + 13475547-13476705,13477801-13477931 30 1.9
05_07_0192 - 28314224-28316287 30 1.9
05_01_0358 + 2808627-2809847 30 2.5
02_01_0123 + 896128-896429,896578-896608,896903-896995,897096-89... 29 4.3
12_02_0080 + 13314740-13315892,13316725-13316732 29 5.7
02_05_0856 - 32272757-32273494,32273578-32273866,32273961-322743... 29 5.7
10_08_0548 - 18685114-18685230,18685615-18685724,18685779-186858... 28 7.6
12_01_0713 - 6178517-6178747 28 10.0
05_03_0086 + 8279518-8280320,8280923-8281844 28 10.0
>08_01_0684 +
6009474-6009582,6009715-6009904,6011412-6011483,
6011644-6011715,6011806-6011877,6012163-6012234,
6012283-6012354,6012479-6012550,6012634-6012705,
6013112-6013183,6013275-6013349,6013453-6013524,
6013619-6013684,6013752-6013777,6014179-6014558,
6014642-6014840,6014910-6015068,6015569-6015613,
6015742-6015973,6016053-6016203,6016306-6016665
Length = 879
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 205 TSWEFTGGRTSWESARVGTTTLPISAVKQ 119
T W+F GG TS+ ++ G+TT +S K+
Sbjct: 831 TEWQFRGGNTSYVTSHSGSTTPKLSRQKE 859
>12_02_0088 + 13475547-13476705,13477801-13477931
Length = 429
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = -1
Query: 346 RGTLLLSIDGGTERAAELDTSLGRVFK*SQLIFNSSLTSSSAITGGRTSWEFTGGRTSWE 167
RG LL+ + G A L T+ RVF+ +FN+ T + GGR + G S+E
Sbjct: 270 RGKLLMVVRLGDREPARLPTTTFRVFEREDELFNNYWTKLPDL-GGRMLFVGRGCSRSYE 328
Query: 166 SA 161
+A
Sbjct: 329 AA 330
>05_07_0192 - 28314224-28316287
Length = 687
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 447 KNIFFCDDLHSGVPGRG-AAGVRPFCR-SLQSHAIPEGLCSC 328
KN+ CDD H + A G R R +++ H I +G+CSC
Sbjct: 642 KNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSC 683
>05_01_0358 + 2808627-2809847
Length = 406
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +2
Query: 89 LPHPSNRNALLLHGGNRQGGGTYSCGLPRG-PTTSELPRGPT 211
LPH + + G G Y CG PRG ++ PR PT
Sbjct: 78 LPHGGGQRIIPCFGDAPPAGLPYCCGTPRGWLALADAPRSPT 119
>02_01_0123 +
896128-896429,896578-896608,896903-896995,897096-897158,
897279-897390,897947-898032,898845-898903,898990-899092,
899182-899242,899472-899554,899635-899715,900018-900077
Length = 377
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 622 LDCAS*KG--RPELVDVPAPSQFRSYAGETDEASDPSVEIYY**VRRVK*FK 473
L CA +G R E+ P PS SY G +DE D ++++ R++K K
Sbjct: 85 LACAMDEGKTRLEIEFPPLPSNISSYKGSSDEFIDANIQLALAVARKLKELK 136
>12_02_0080 + 13314740-13315892,13316725-13316732
Length = 386
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -1
Query: 346 RGTLLLSIDGGTERAAELDTSLGRVFK*SQLIFNSSLTSSSAITGGRTSWEFTGGRTSWE 167
RG LL+ + G L T+ RVF+ +FN+ T + GGR + G S+E
Sbjct: 268 RGKLLMVVRLGDREPGRLPTTTFRVFEREDELFNNYWTKLPDL-GGRMLFVGRGCSRSYE 326
Query: 166 SA 161
+A
Sbjct: 327 AA 328
>02_05_0856 -
32272757-32273494,32273578-32273866,32273961-32274312,
32275232-32275850
Length = 665
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 95 HPSNRNALLLHGGNRQGGGTYSCGLPRGPTTSELPR 202
H +R L GG+R G LP G TTSE R
Sbjct: 192 HGGDRGRQALQGGHRHGRFMMRLKLPNGVTTSEQTR 227
>10_08_0548 -
18685114-18685230,18685615-18685724,18685779-18685802,
18686135-18686213,18686346-18686588,18686659-18686823,
18686960-18687037,18687185-18687231,18687319-18687379,
18687667-18687723,18688164-18688247,18689292-18689357,
18689447-18689574,18689693-18689885
Length = 483
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 532 LHPSHRHNYGTGSAPVHQPILVYP 603
LH +H H+ G GSAP H P+L P
Sbjct: 19 LHHNHHHHRGGGSAPPH-PLLRPP 41
>12_01_0713 - 6178517-6178747
Length = 76
Score = 27.9 bits (59), Expect = 10.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 271 KPDPKRCPVPQRAPCRHL 324
+P P+ CP+P RA +H+
Sbjct: 50 RPSPEGCPIPPRAEAQHM 67
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -1
Query: 328 SIDGGTERAAELDTSLGRVFK*SQLIFNSSLTSSSAITGGRTSWEFTGGRTSWESARVGT 149
SI G+ R+ L++S + + +S +++S G+ TGG + WE+ + T
Sbjct: 94 SISSGSTRSNSLESSSTGAAA-APTVLTTSASTASVSASGQNVKRHTGGDSRWEAVQAAT 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,263,225
Number of Sequences: 37544
Number of extensions: 524090
Number of successful extensions: 1574
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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