Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40553
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    28   0.088
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   3.3  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   3.3  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   4.4  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   7.7  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   7.7  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   7.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.7  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 0.088
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +2

Query: 344 SGIACDCKLRQKGLTPAAPRPGTPLWRSSQKNIFLDCSLQCNIFKLFNSTNLSVIYFNGW 523
           SGI     LR  G+      PG      + ++  +D SL  + +  FN TN+    +N  
Sbjct: 333 SGIGPKEHLRSLGIPVVVDLPGVGENLHNHQSFGMDFSLNEDFYPTFNQTNVDQYLYN-- 390

Query: 524 VTGFIRLTGI 553
            TG +  TG+
Sbjct: 391 QTGPLSSTGL 400


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 314 HGARCGTGHLFGSGFQVKSINFQFKP 237
           HG R G G      FQ+K  N + KP
Sbjct: 46  HGHREGLGRRHRYNFQLKPYNPEHKP 71


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 314 HGARCGTGHLFGSGFQVKSINFQFKP 237
           HG R G G      FQ+K  N + KP
Sbjct: 47  HGHREGLGRRHRYNFQLKPYNPEHKP 72


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 9   GAHRHLQRKCATHLEI*VLRSQYSYNGYLTLR 104
           G  R   R+  T  +   L  ++ YN YLT R
Sbjct: 5   GCPRRRGRQTYTRFQTLELEKEFHYNHYLTRR 36


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 519 PLKYITDKFVELNSLKILHCKEQSKNIFFC 430
           P +  T KF  +N  +ILH      N F C
Sbjct: 21  PDESYTSKFDNINVDEILHSDRLLNNYFKC 50


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 519 PLKYITDKFVELNSLKILHCKEQSKNIFFC 430
           P +  T KF  +N  +ILH      N F C
Sbjct: 21  PDESYTSKFDNINVDEILHSDRLLNNYFKC 50


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 519 PLKYITDKFVELNSLKILHCKEQSKNIFFC 430
           P +  T KF  +N  +ILH      N F C
Sbjct: 21  PDESYTSKFDNINVDEILHSDRLLNNYFKC 50


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 324 IDRSRVPRGLRAIVNFDRRALRQPHRGPGLHCGG 425
           +DR+ + + ++   N    A R   R  GL CGG
Sbjct: 273 LDRNVIDKWIKTEDNESLNAARMLIRQEGLLCGG 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,252
Number of Sequences: 438
Number of extensions: 4906
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)