Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40549
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    29   0.33 
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   2.3  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   4.1  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    25   5.4  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    25   9.5  

>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 404 HNPVLRLHYLNLSREFRSLARGGGDL--RNRFTLSMVSSLVSEVRN 273
           HNP   L  L +SRE  SL     D   + R TL  +S+LVS  +N
Sbjct: 255 HNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTLVSNCKN 300


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 453 SIKLITSNKRMWWIFATQSC 394
           S+  +T+N  +WW++A   C
Sbjct: 390 SLTTVTTNTNIWWVWAESRC 409


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
 Frame = +1

Query: 64  PTEDYPKIVRSEFDASPDGAYNYNFETSNGIVRTNTGELKEALDDDNKPHV-IVAVRGSY 240
           P ED P +  S+    P  A     ++S+ + + N   ++  L  + +    + A   S 
Sbjct: 612 PFEDAPALDESDLSGDPFWAIQPK-QSSSQVPKENHHNIQSKLSINTEAATDLKANELSS 670

Query: 241 SYTNTTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNS 363
             T           SL+ L   LR +  +R  PP +K++NS
Sbjct: 671 PKTPEYCRGDDRSISLSPLSYRLRKSKHIRESPPSSKVINS 711


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
            Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 228  AWKLQLHEHDGKPETI 275
            AWK   H+HD  PE I
Sbjct: 963  AWKAWAHDHDNNPEGI 978


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 121 AYNYNFETSNGIVRTNTGELKEALDDDNKPHVIVA 225
           A    F+  NG+ +T    + EAL   +K H++ A
Sbjct: 65  AMKITFDLINGVYKTVPDRVPEALVSTSKKHLVAA 99


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 181 KEALDDDNKPHVIVAVRGSYSYTNTTANLKPLR-TSLTRLDTM 306
           +E   + N+ +VIV + G +     T  LKPL   S ++ DT+
Sbjct: 59  EEVSQEPNQKNVIVGISGLHVVNLPTLTLKPLYWPSASKNDTL 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,732
Number of Sequences: 5004
Number of extensions: 36567
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)