Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40549
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0406 + 24978845-24978970,24979073-24979142,24979541-249795...    31   0.59 
09_02_0454 + 9514706-9515776                                           28   5.5  
10_08_0676 - 19826485-19827711                                         27   7.2  
12_01_1109 - 11726818-11727719,11728225-11728394,11730407-117304...    27   9.6  
09_03_0032 + 11742279-11742398,11743318-11743359,11743394-117435...    27   9.6  
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298...    27   9.6  

>04_04_0406 +
           24978845-24978970,24979073-24979142,24979541-24979556,
           24979813-24979930,24980015-24980137,24980249-24980408,
           24980470-24980546,24980635-24980687,24981263-24981317,
           24981664-24981858
          Length = 330

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 273 WFQVCRRVRVTVASTHSNNNVRLVVVVESLLQLTSVRTHDAVGSLEIVVV 124
           W  +  +  V     H NN V L V+ ESLLQ    R   +  ++ +++V
Sbjct: 248 WDVLANQAVVDFVRLHLNNGVELSVICESLLQEAITRDPPSTDNMSVILV 297


>09_02_0454 + 9514706-9515776
          Length = 356

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 156 DAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGS 55
           D VGS  +V V      V     D R VLCRGG+
Sbjct: 187 DHVGSTAVVAVVEESRVVVANCGDSRAVLCRGGA 220


>10_08_0676 - 19826485-19827711
          Length = 408

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -1

Query: 261 CRRVRVTVASTHSNNNVRLVVVVESLLQLTSVRTHDAVGSLEIVVVSSIGAGVEF 97
           CR     +A+       R ++ VES ++ T++R +D +   ++VVV  I   V +
Sbjct: 130 CRAFADALAAVDGGAVDRAILPVESTMEGTALRNYDLLLRHDLVVVQEINLFVHY 184


>12_01_1109 - 11726818-11727719,11728225-11728394,11730407-11730483,
            11730559-11730645,11730730-11730816,11731887-11731991,
            11732133-11732168,11733636-11733754,11733862-11734067,
            11735854-11735906,11735986-11736153,11736507-11736591,
            11737845-11738023,11738939-11739070,11739209-11739295,
            11739920-11739972,11740820-11740892,11741791-11742442,
            11743165-11743229
          Length = 1111

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 231  WKLQLHEHDGKPETITY--FADETGYHAQGESIPQVASATS*TSKFP 365
            W+L  ++ DGK  T+ +  F++E   H  G +  +V   T   SK P
Sbjct: 1015 WRLSCNKFDGKVATLAFSNFSEEMVVHNSGPANGEVIRLTVDYSKKP 1061


>09_03_0032 +
           11742279-11742398,11743318-11743359,11743394-11743555,
           11743768-11743888,11744104-11744195,11744271-11744371,
           11744592-11744949
          Length = 331

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 241 SYTNTTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLN---SLDRF 375
           S   + + L+PL   L  + T   +N    SP PR+K LN   SL RF
Sbjct: 4   SKPQSKSKLQPLTNHLLSVFTSANLNSSSDSPLPRSKYLNHLSSLSRF 51


>02_05_0702 -
           31027908-31027958,31028062-31029311,31029665-31029842,
           31029955-31030017,31031597-31031704,31031772-31031836,
           31031928-31032015,31032104-31032157,31032234-31032380,
           31033358-31033429,31034077-31034226,31034317-31034430,
           31034762-31034875,31035925-31036077,31037437-31037529,
           31038202-31038318,31038984-31039086,31039192-31039376,
           31039448-31039522,31040451-31040534,31041547-31041588,
           31041668-31041847,31042109-31042162,31042239-31042280,
           31042869-31042967,31043040-31043174,31043325-31043427,
           31045061-31045134,31045227-31045270,31045393-31045471,
           31045592-31045705,31045842-31045946,31046027-31046161,
           31046447-31046546,31046870-31046883,31046936-31047004,
           31047079-31047182,31047299-31047347,31047931-31048023,
           31048102-31048210,31048619-31048755,31048851-31048928,
           31049015-31049104,31049402-31049467,31049546-31049638,
           31049711-31049839,31050024-31050122,31051366-31051512,
           31051605-31051910
          Length = 2050

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +1

Query: 160 RTNTGELKEALDDDNKPHVIVAVRGSY-----SYTNTTANLKPLRTSLTRLDTMLRVNLF 324
           R+N   + + L+DD +  ++V   GS      +Y   +   K L   LT+L T L   L 
Sbjct: 694 RSNVEHIPKNLEDDGRKDLMVLFEGSQEVSRKAYEQVSERAKSLDEELTKLRTEL---LS 750

Query: 325 LRSPPPRAKL 354
           LRS   +A L
Sbjct: 751 LRSERDKAVL 760


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,810,479
Number of Sequences: 37544
Number of extensions: 283530
Number of successful extensions: 790
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)