Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40549
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22730.1 68417.m03279 leucine-rich repeat transmembrane prote...    31   0.37 
At4g24290.2 68417.m03488 expressed protein                             27   6.1  
At4g24290.1 68417.m03487 expressed protein                             27   6.1  
At5g23210.2 68418.m02715 serine carboxypeptidase S10 family prot...    27   8.0  
At5g23210.1 68418.m02714 serine carboxypeptidase S10 family prot...    27   8.0  
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ...    27   8.0  

>At4g22730.1 68417.m03279 leucine-rich repeat transmembrane protein
           kinase, putative leucine rich repeat receptor-like
           kinase, Oryza sativa, PATCHX:E267533
          Length = 688

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 241 SYTNTTANLKPLRTSLTRLDTM-LRVNLFLRSPPPRAKLLNSLDRFK**SLNTGLCGEDP 417
           S+ N    +     ++ +LDT+ LR N      PP  K LN   +F+    NTGLCG D 
Sbjct: 196 SFNNLLGLIPKTLANIPQLDTLDLRNNTLSGFVPPGLKKLNGSFQFE---NNTGLCGIDF 252

Query: 418 P 420
           P
Sbjct: 253 P 253


>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 132 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 49
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At4g24290.1 68417.m03487 expressed protein
          Length = 350

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 132 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 49
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At5g23210.2 68418.m02715 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 403

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 238 YSYTNTTANLKPLRTSLTRLDTM-LRVNLFLRSP 336
           +SYTNT+ ++K L  ++T  D+    VN F R P
Sbjct: 58  FSYTNTSRDIKQLGDTVTARDSYNFLVNWFKRFP 91


>At5g23210.1 68418.m02714 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 363

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 238 YSYTNTTANLKPLRTSLTRLDTM-LRVNLFLRSP 336
           +SYTNT+ ++K L  ++T  D+    VN F R P
Sbjct: 58  FSYTNTSRDIKQLGDTVTARDSYNFLVNWFKRFP 91


>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein  ;
           contains Pfam profiles PF00331: Glycosyl hydrolase
           family 10, PF02018: Carbohydrate binding domain
          Length = 752

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 310 RVNLFLRSPPPRAK-LLNSL 366
           RV L+L  PPPRA  LLNSL
Sbjct: 154 RVILYLEGPPPRADILLNSL 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,638,661
Number of Sequences: 28952
Number of extensions: 208773
Number of successful extensions: 652
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)