Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40548
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 29 0.70
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 29 0.93
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 28 1.2
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 27 2.8
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 26 5.0
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.6
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 6.6
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 8.7
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 8.7
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.7
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 29.1 bits (62), Expect = 0.70
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 568 NARSDSSQSTNNNVPSKKILKK-KHLYDEATRRYKNKLNKKK 446
+A+S S ++ N +PS K LKK KHL E + + KK+
Sbjct: 407 SAQSSSVKNCNERIPSAKALKKQKHLVPENKSKLQYVWQKKE 448
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 28.7 bits (61), Expect = 0.93
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 584 MNKYASCVVRQNLL*ISKLFIVNCNVIFISVLGYKEII 697
MNK V+ + + +S L C +IFI VL YK ++
Sbjct: 61 MNKVEKYVIPETMGAVSALVYFMCMIIFIPVLFYKYLV 98
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 583 RHRESNARSDSSQSTNNNVPSKKILKKKHLYDEATRR 473
R + + D ++ N++ +K+L++ HL EAT R
Sbjct: 121 RQNDDGSDDDEVENLKNDLELQKLLRESHLLHEATSR 157
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 583 RHRESNARSDSSQSTNNNVPSKKILKKKHLYDEATRRYKNKLNKK 449
+H+ S+ R+DS S N PSK + + L A + + +K+
Sbjct: 292 QHQNSSGRTDSFHSLNTETPSKSTVDDQILSTAAQPKKSSDTDKE 336
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 607 NTRGVLIHRHRES-NARSDSSQSTNNNVPSKKILKKKH 497
N R L+ RHRE R + + NN+ K ++ H
Sbjct: 543 NARKPLVGRHREKRQLRKEKPEKKNNSTKQKDLITVSH 580
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 582 DTENQTRDPIAHKAQTTMSLLKKY*KKN 499
DTEN + +A ++ ++ L KY +KN
Sbjct: 389 DTENSVKQSLASPSEASLPNLSKYSRKN 416
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 629 ISKLFIVNCNVIFISVLGYKEIIVIMTLRREVDL 730
I L ++ C + +S LG++ I ++T +DL
Sbjct: 1316 IENLLVLQCAISVVSSLGHEHISCVLTQGAYIDL 1349
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -3
Query: 604 TRGVLIHRHRESNARSDSSQSTNNNVPSK---KILKKKHLYDEATRRYKNKLNKKKPW 440
T G + + ++ S+ S S + SK K LK+KH DE++ K+ K P+
Sbjct: 325 TSGEVSAQSSTNSTSSEESTSVKDEDSSKIHDKSLKRKHEDDESSTSTKSSRTTKTPF 382
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 583 RHRESNARSDSSQSTNNNVPSKKILKKKHLYDEATRRYKNKLNKK 449
R AR Q N+N SK +K+ + A+ YKN +K
Sbjct: 27 RRWTDRARDRKRQKRNSNESSKSTVKRNSGTNGASTDYKNSQKEK 71
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 613 SNNTRGVLIHRHRESNARSDSSQSTNNN 530
S RG IH S+++S +S +TNNN
Sbjct: 516 SPRLRGSPIHNQPVSSSKSTASLNTNNN 543
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,638
Number of Sequences: 5004
Number of extensions: 54508
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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