Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40547
         (411 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VMY8 Cluster: CG1107-PA, isoform A; n=5; Diptera|Rep:...    34   1.3  
UniRef50_Q4S2V5 Cluster: Chromosome 8 SCAF14759, whole genome sh...    32   4.0  
UniRef50_Q6K607 Cluster: Putative uncharacterized protein OJ1789...    31   9.1  

>UniRef50_Q9VMY8 Cluster: CG1107-PA, isoform A; n=5; Diptera|Rep:
           CG1107-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 1165

 Score = 33.9 bits (74), Expect = 1.3
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +2

Query: 146 WLPA*QPSVPKAAFAVLLAMAYIVPRAVTSPSFISSPPPKA 268
           W+PA     P A F+  L  A ++   VT PS  SSPPP A
Sbjct: 728 WMPAKPKRSPAALFSSDLEYAEMLDNFVTKPSTRSSPPPGA 768


>UniRef50_Q4S2V5 Cluster: Chromosome 8 SCAF14759, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 8 SCAF14759, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 1149

 Score = 32.3 bits (70), Expect = 4.0
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +3

Query: 48  RGNDSMQLMTSSRC*HDDVDSCFLVFPGGVTTSGSQLSNRLSRKLRLQYYSRWLTSC 218
           R   S     +  C   DV SC +   GG T S  Q+ N  SR+LR      W   C
Sbjct: 687 RRKASYMTQRTMMCSGQDVSSCCVFLAGGATNSQIQIWNNTSRELRFDL--SWPAHC 741


>UniRef50_Q6K607 Cluster: Putative uncharacterized protein
           OJ1789_D08.13; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OJ1789_D08.13 - Oryza sativa subsp. japonica (Rice)
          Length = 111

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 215 VPRAVTSPSFISSPPPKAP*H*YFRSFPQLYKKPAVPRRKVT 340
           VPRA TSP     P  +   H Y+   P L  +PA  +R+ T
Sbjct: 50  VPRATTSPVAPPKPSSRRSIHRYYFYAPALQARPAESQRRTT 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,528,847
Number of Sequences: 1657284
Number of extensions: 7862249
Number of successful extensions: 19742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19734
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)