Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40547
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   6.1  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    25   6.1  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   6.1  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   8.0  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   8.0  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 17  YHFALHHSMCKRE*FNATDDVF 82
           Y FA+HH+  +RE    ++D+F
Sbjct: 819 YGFAIHHAGMRREDRQTSEDLF 840


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 181 SFRDRRLLSWEPLVVTP 131
           SFR +R+ SW+PL +TP
Sbjct: 28  SFRQQRIKSWQPL-LTP 43


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 273 NINILDLSHNFIKSRRCLE 329
           N+ +LDLSHN+I     L+
Sbjct: 892 NLRVLDLSHNYISDIESLK 910


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 185 FAVLLAMAYIVPRAVTSPSFISSPP 259
           +A +  M+  +P    S SF+SSPP
Sbjct: 445 WAAIATMSLQLPSTANSISFLSSPP 469


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 133  PPGNTRKQESTSSCQHLEDVISCIESFPLAHRM 35
            PPGN  +    S C HL   + C +++ +A  M
Sbjct: 1415 PPGNNIRGVFVSGCGHLMH-LGCFKNYYVARSM 1446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,195
Number of Sequences: 5004
Number of extensions: 32168
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)