Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40547
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.77 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   4.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   5.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 159 SNRLSRKLRLQYYSRWLTSCHVQ*PRRAL*VHLRQKHHNINILDLSHNF-IKSRRCLE 329
           S  LS K R +Y++R + S H Q  +  + + ++ K   ++I+    N+ IK+   LE
Sbjct: 245 SPELSNKQRFEYFTRTIPSDHYQ-VKAMVEIVMKMKWSYVSIIYEESNYGIKAFEELE 301


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 254 PPPKAP*H*YFRSFPQ 301
           PPP    H Y R FP+
Sbjct: 322 PPPNLDYHDYSRQFPR 337


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 54  NDSMQLMTSSRC*HDDVDSCFLVFPGGVTTSGSQLSNRLSRKLRLQYYS 200
           +DS Q +TSS   +D   + + +     +     L   LS K +  YYS
Sbjct: 217 DDSFQRLTSSTFVYDPRYTKYTINDESFSLQDGILGMALSHKTQNLYYS 265


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 79  LLGADMMTWTPVFSC 123
           +LG  ++ W P F+C
Sbjct: 624 VLGVFLICWLPFFTC 638


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +1

Query: 181 CVCSTTRDGLHRATCSNLAELY 246
           CVC       HR  C++  ++Y
Sbjct: 104 CVCMRKCPRRHRPVCASNGKIY 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,370
Number of Sequences: 438
Number of extensions: 2340
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)