Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40545
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 105 6e-24
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 55 1e-08
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 31 0.15
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 29 1.0
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 3.2
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 27 4.2
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 26 7.4
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch... 26 7.4
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 26 7.4
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 105 bits (253), Expect = 6e-24
Identities = 46/80 (57%), Positives = 61/80 (76%)
Frame = +1
Query: 265 VVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLK 444
+++DKNC+K+H ++ N++C GAGTAADTE T ++S +EL L+T R V TA T+LK
Sbjct: 60 IIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLK 119
Query: 445 RMLFRYQGHIGAALVLGGVD 504
+ LFRYQGHIGA LVLGG D
Sbjct: 120 QHLFRYQGHIGAYLVLGGYD 139
Score = 105 bits (251), Expect = 1e-23
Identities = 53/103 (51%), Positives = 65/103 (63%)
Frame = +3
Query: 510 GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFND 689
GPH++ I HGS DKLPY +GSGSLAA++V E ++ D+ E +LV++AI AGIFND
Sbjct: 142 GPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFND 201
Query: 690 LGSGSNVDLCVIRNTGPAQYLRTYEKLM*KGKKQGSYRYALGT 818
LGSGSN DL VI Y R Y K + KQ Y Y GT
Sbjct: 202 LGSGSNCDLVVIDEEKATPY-RGYSKPNERATKQSKYTYDRGT 243
Score = 75.4 bits (177), Expect = 9e-15
Identities = 35/60 (58%), Positives = 41/60 (68%)
Frame = +2
Query: 113 GFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAMKIQLSQTKTAKK 292
GF FE +QRN L +KGFP PKAT TGTTIVG+I D ++LGADTRA + K KK
Sbjct: 9 GFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKK 68
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = +1
Query: 268 VSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKR 447
++++ K+ L N++CC +G+AADT+ + L + R+ G V TAATL
Sbjct: 50 IANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASE 109
Query: 448 MLFRYQGHIGAALVLGGVD 504
M ++ + + A L++ G D
Sbjct: 110 MCYQNKNMLSAGLIVAGYD 128
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/78 (28%), Positives = 40/78 (51%)
Frame = +3
Query: 504 QNGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIF 683
+ G +Y I GS+ K P A GSGS +A ++ +M +EE + +++A+A +
Sbjct: 130 KTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAME 189
Query: 684 NDLGSGSNVDLCVIRNTG 737
D SG + + ++ G
Sbjct: 190 RDGSSGGTIRMVILNKDG 207
Score = 30.7 bits (66), Expect = 0.26
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 185 KTGTTIVGIIYADGVILGADTR 250
+ GTTI + Y DGVIL AD+R
Sbjct: 22 RMGTTITALRYKDGVILAADSR 43
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 31.5 bits (68), Expect = 0.15
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 504 QNGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIF 683
++GP +Y P G+ + +GSGS A + + +DM EE + L+ + +
Sbjct: 149 EHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVME 208
Query: 684 NDLGSGSNVDLCVIRNTG 737
L S NV L + G
Sbjct: 209 EKLDS-KNVQLAKVTAEG 225
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 170 APKATKTGTTIVGIIYADGVILGADTR 250
A +A K G+T +G+ D V+LG + R
Sbjct: 27 AIEAIKLGSTAIGVKTKDAVVLGVEKR 53
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 116 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTR 250
FS F N L Q + A A G T VGI DGV+L + +
Sbjct: 7 FSLTTFSPNGKLVQIEY-ALNAVNAGVTSVGIKATDGVVLATEKK 50
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 3.2
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +3
Query: 543 SVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCV 722
SV KLP T+ + A F G+ + GK LV+D ++ I+N+ S N+ LC
Sbjct: 2381 SVYKLPIQTIAVNARNAEIAFSTGFYCCVVNVNGKILVKDKLSR-IYNE-NSDENI-LCS 2437
Query: 723 IRNTG 737
TG
Sbjct: 2438 CFYTG 2442
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 101 IPVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAMKIQLSQTK 280
+PVP S + RN K GTT + Y G+++ D+RA L ++
Sbjct: 33 VPVPQSSL--YLRNLTDETKNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIASQ 90
Query: 281 TAKK 292
T KK
Sbjct: 91 TVKK 94
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 203 VGIIYADGVILGADTRAMKIQLSQTKTAKK 292
+GI+ DG++L A+ + L Q ++A+K
Sbjct: 35 LGIVAKDGIVLAAEKKVTSKLLEQEESAEK 64
>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/45 (26%), Positives = 17/45 (37%)
Frame = -3
Query: 549 LQIHEDKCSKYEDRSVNTSQNQSSPYMTLIAKQHSFQQCGSSFYW 415
L + D SK+ V + SPY+ + F C S W
Sbjct: 109 LILERDAPSKFSIELVEERREPESPYLLFFSNSSRFSACEESGEW 153
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 188 TGTTIVGIIYADGVILGADTRA 253
TG++++ + +ADGV++ AD A
Sbjct: 42 TGSSVLALKFADGVMIAADNLA 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,383,131
Number of Sequences: 5004
Number of extensions: 71348
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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