Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40545
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 121 8e-28
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 52 7e-07
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 51 1e-06
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 39 0.004
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 33 0.36
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 30 1.9
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 30 2.5
03_01_0090 + 718746-719998,720089-720161,720198-720254 30 2.5
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 29 4.4
07_03_0102 - 13418882-13419082,13419291-13419433,13419451-134196... 29 5.9
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 29 5.9
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 121 bits (291), Expect = 8e-28
Identities = 56/88 (63%), Positives = 67/88 (76%)
Frame = +1
Query: 247 KSHENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVET 426
++ E +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL+L R TGR V T
Sbjct: 57 RATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVT 116
Query: 427 AATLLKRMLFRYQGHIGAALVLGGVDRT 510
+ TLLK LF YQGH+ AALVLGGVD T
Sbjct: 117 SLTLLKSHLFSYQGHVSAALVLGGVDVT 144
Score = 118 bits (283), Expect = 7e-27
Identities = 53/85 (62%), Positives = 67/85 (78%)
Frame = +3
Query: 510 GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFND 689
GPH++ +YPHGS D LP+ATMGSGSLAAM+VFE+ +K + EEG +LV +AI GIFND
Sbjct: 145 GPHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAIRGGIFND 204
Query: 690 LGSGSNVDLCVIRNTGPAQYLRTYE 764
LGSGSNVD+CVI G +YLR ++
Sbjct: 205 LGSGSNVDVCVI-TKGKTEYLRNHQ 228
Score = 69.7 bits (163), Expect = 3e-12
Identities = 32/63 (50%), Positives = 42/63 (66%)
Frame = +2
Query: 104 PVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAMKIQLSQTKT 283
P GFS++N RNA L +KG P KTGTTIVG+++ DGV+LGADTRA + + K
Sbjct: 9 PKGGFSYDNCARNAMLVEKGLKMPGFLKTGTTIVGLVFQDGVVLGADTRATEGPIVADKN 68
Query: 284 AKK 292
+K
Sbjct: 69 CEK 71
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 51.6 bits (118), Expect = 7e-07
Identities = 23/80 (28%), Positives = 47/80 (58%)
Frame = +1
Query: 268 VSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKR 447
V+++ KI L N+Y C +G+AADT++ ++ V L + G+ V+ AA L++
Sbjct: 51 VANRASDKITQLTDNVYVCRSGSAADTQVISEYVRYFLHQHTIQLGQPATVKVAANLIRL 110
Query: 448 MLFRYQGHIGAALVLGGVDR 507
+ ++ + + A +++GG D+
Sbjct: 111 LAYQNKNMLQAGMIVGGWDK 130
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/87 (28%), Positives = 41/87 (47%)
Frame = +3
Query: 510 GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFND 689
G I+ + G++ + P+A GSGS + + WK M++EE +K V ++ I D
Sbjct: 133 GGQIFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARD 192
Query: 690 LGSGSNVDLCVIRNTGPAQYLRTYEKL 770
SG V I G ++ +KL
Sbjct: 193 GASGGVVRTVTINADGVSRKFHPGDKL 219
Score = 32.7 bits (71), Expect = 0.36
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 167 PAPKATKTGTTIVGIIYADGVILGADTR 250
P + GTTIVG+ Y GV+L AD+R
Sbjct: 17 PTSGEHRMGTTIVGVCYDGGVVLAADSR 44
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/80 (28%), Positives = 46/80 (57%)
Frame = +1
Query: 268 VSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKR 447
V+++ KI L N+Y C +G+AADT++ + V L + G+ V+ AA L++
Sbjct: 51 VANRASDKITQLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQPATVKVAANLIRL 110
Query: 448 MLFRYQGHIGAALVLGGVDR 507
+ ++ + + A +++GG D+
Sbjct: 111 LAYQNKNMLQAGMIVGGWDK 130
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/87 (28%), Positives = 41/87 (47%)
Frame = +3
Query: 510 GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFND 689
G I+ + G++ + P+A GSGS + + WK M++EE +K V ++ I D
Sbjct: 133 GGQIFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARD 192
Query: 690 LGSGSNVDLCVIRNTGPAQYLRTYEKL 770
SG V I G ++ +KL
Sbjct: 193 GASGGVVRTVTINADGVSRKFHPGDKL 219
Score = 32.7 bits (71), Expect = 0.36
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 167 PAPKATKTGTTIVGIIYADGVILGADTR 250
P + GTTIVG+ Y GV+L AD+R
Sbjct: 17 PTSGEHRMGTTIVGVCYDGGVVLAADSR 44
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = +3
Query: 504 QNGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIF 683
+ GP +Y + G+ ++GSGSL A + + G++ M EE +L R AI F
Sbjct: 112 EKGPGLYYVDSEGARLMGSRFSVGSGSLYAYGILDEGYRYVMPVEEAAELARRAIYQATF 171
Query: 684 NDLGSGSNVDL 716
D SG V +
Sbjct: 172 RDGASGGCVSV 182
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 32.7 bits (71), Expect = 0.36
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +3
Query: 573 GSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTG----P 740
G G+ A+ + W+ DM EE KLV + ++ D S + + I G P
Sbjct: 505 GFGNHMAIPILRTEWREDMTFEEAVKLVEKCLLVLLYRDRSSINKFQIAKITTEGATIYP 564
Query: 741 AQYLRTY 761
L+TY
Sbjct: 565 PYSLKTY 571
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 188 TGTTIVGIIYADGVILGADTRA 253
TG++I+ + Y DGVI+ +DT A
Sbjct: 368 TGSSIIALKYKDGVIMASDTGA 389
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +3
Query: 507 NGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFN 686
NGP +Y + P GS + MG A E + DM ++ + G
Sbjct: 165 NGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEG 224
Query: 687 DLGSGSNVDLCVIRN 731
+ S +N+++ VIR+
Sbjct: 225 QI-SANNIEIGVIRS 238
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = +3
Query: 507 NGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFN 686
NGP +Y + P GS + MG A E + DM ++ + G
Sbjct: 202 NGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEG 261
Query: 687 DLGSGSNVDLCVIRN 731
+ S +N+++ +IR+
Sbjct: 262 QI-SANNIEIGIIRS 275
>03_01_0090 + 718746-719998,720089-720161,720198-720254
Length = 460
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 134 QRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAMKIQLSQTKTAKKSTI*HPT 313
QRN ++ K FP T G TIV Y G + R+ ++ + T + I PT
Sbjct: 348 QRNLCVSSKAFP----TVVGDTIVFHHYQQGYLAQYHLRSGTLEPASDGTIAEYAIPSPT 403
Query: 314 CIV 322
CI+
Sbjct: 404 CII 406
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Frame = +2
Query: 635 GRRKKACP---RCYCCWY 679
G +K ACP RCY CWY
Sbjct: 139 GHQKSACPGSTRCYNCWY 156
>07_03_0102 -
13418882-13419082,13419291-13419433,13419451-13419647,
13419811-13420395,13420712-13420908
Length = 440
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = -3
Query: 654 QAFFLLPHSYHVSNLLQTLP*PQEIRIPWLHMVIYLQIHEDKCSKYEDRSVNTSQNQSSP 475
+ +F L S+ ++ +P + + W+ ++IYL + + S RS + QN+
Sbjct: 188 ETYFALNEIDDYSSFVEIVPDHEVENLLWMLVIIYLMVMVEMMSCTLGRSSTSGQNKMVN 247
Query: 474 YMTLI 460
Y+ ++
Sbjct: 248 YLLMV 252
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +3
Query: 504 QNGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAA 674
++G H+Y P G+ + +GS S AA E ++ N+ ++L++DA++A
Sbjct: 141 ESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFE-GYNDYTPEQLIKDALSA 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,039,727
Number of Sequences: 37544
Number of extensions: 479017
Number of successful extensions: 1059
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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