Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40543
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 44 2e-05
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 42 6e-05
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 41 2e-04
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 35 0.013
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.37
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 29 0.64
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 29 0.85
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 28 1.5
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 28 1.5
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 27 2.6
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 4.5
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 25 7.9
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 44.4 bits (100), Expect = 2e-05
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +2
Query: 254 GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHK 433
G SDSGKT LF L Y + + T S++ N E + +VDLPG R + +
Sbjct: 44 GPSDSGKTSLFCELIYKEKKTTVPSIEPN--EAVWKYGAW-LVDLPGHPRAKRWITTKFS 100
Query: 434 S--SAKGIVFVIDSINIQKEIRDV 499
+ K +VFV++S I +++ +V
Sbjct: 101 GNYNVKAVVFVLNSATIDRDVHEV 124
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +1
Query: 556 LLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSV 678
LLI CNK D A+ ++ I+ LL+ E++ + K+ QL+S+
Sbjct: 143 LLIACNKFDLFTAQPAEKIQQLLKAELHNILEEKNLQLESI 183
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 42.3 bits (95), Expect = 6e-05
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = +2
Query: 254 GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHK 433
GL +GKT + +L +Q T ++ N+E N + D+ GQ+++R + +
Sbjct: 28 GLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIR-PLWRHYF 86
Query: 434 SSAKGIVFVIDS 469
+ KG++FV+DS
Sbjct: 87 TGTKGLIFVVDS 98
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/84 (27%), Positives = 45/84 (53%)
Frame = +2
Query: 254 GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHK 433
GL +GKT + +L + T ++ N+E N + + D+ GQ+++R + +
Sbjct: 24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIR-PLWRHYF 82
Query: 434 SSAKGIVFVIDSINIQKEIRDVAE 505
+ +GI+FV+DS N ++ I + E
Sbjct: 83 QNTQGIIFVVDS-NDRERISEAHE 105
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 34.7 bits (76), Expect = 0.013
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +2
Query: 254 GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHK 433
GL ++GKT + L + + I I D+ GQ+ LRN F++ +
Sbjct: 23 GLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRN-FWKNYF 81
Query: 434 SSAKGIVFVIDSIN 475
S + I++V+DS++
Sbjct: 82 ESTEAIIWVVDSLD 95
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.37
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Frame = +2
Query: 299 YSQYRQTFTS-MKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKGIVFVIDSI- 472
Y R+ S +++N++ I + DL G +R+ + FE+ K+ +G+ + + SI
Sbjct: 661 YDYLREMLRSNLRQNLQ--IVVQIATRYSDLVGAQRII-EMFEKFKTF-EGLYYYLGSIV 716
Query: 473 NIQKEIRDVAEYYTQSCVIRSFRETQLPF*YCATNRTSH*QKEAKLSKD 619
NI ++ V +Y +C++ F E + C N + +K L K+
Sbjct: 717 NITEDPEVVYKYIQAACLMNQFTEVER---ICRDNNVYNPEKVKNLLKE 762
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 29.1 bits (62), Expect = 0.64
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 450 IPLALLLCCSKNLFLSLSCPGRSTIFNVLLEVIYSSIFSFI 328
+P+A +L C + P RST++N L EV S I SF+
Sbjct: 463 LPIAFILGCLVGILQHYIAP-RSTMYNSLFEVTGSIITSFL 502
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.7 bits (61), Expect = 0.85
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +1
Query: 511 YTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGL-LEKEIN-LVRVTKSNQLQSVD 681
Y +C I++ N+T L + ++ + G+Q +K L + +E++ L+R + +N L+ V+
Sbjct: 410 YKSICQAILRMNSTKALACLDYLNENIFTGNQTMKCLEIHQELSELIRNSSTNYLEPVE 468
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 386 LPGQERLRNKFFEQHKSSAKGIVFVIDSI-NIQKEIRDVAEYYTQS 520
L + L N FFE+ K+ + ++++DS+ ++ EIR + + ++ S
Sbjct: 440 LAEDQLLLNNFFEELKNKLESDLYLLDSVFDLVPEIRSLLQQFSTS 485
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +3
Query: 153 RYITLLSLIVLAVTLIFWWIFS 218
+YI ++S+IVL +T + W++F+
Sbjct: 1440 QYINIISIIVLVLTSLAWFLFN 1461
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -3
Query: 520 RLCIVFCYISDFFLYIDRINHKHNSLSTTLVLFKEFISQSLLSRQIDYFQCFIRSYILFN 341
R I F + L + + + + SLSTT+ LFK+ + + LS I Y +I N
Sbjct: 360 RTAIFFFGTDRYSLPLYKTHARRFSLSTTIHLFKKIV-RITLSTFISYTWIPFLLFIFLN 418
Query: 340 IF 335
IF
Sbjct: 419 IF 420
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -1
Query: 486 SFCILIESITNTIPLALLLCCSKNLFLSLSCPGRSTIFNVLLEVIYSSIFSFI 328
SFC+ + ++T + ALL+ + +L + P I ++L +I +FSF+
Sbjct: 523 SFCVFLVALTRVVSFALLIPIAFDLAI---IP--KVIIAIILIIIQGLVFSFM 570
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 7.9
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Frame = +2
Query: 254 GLSDSGKTLLFVRLAYSQYRQTFTS---MKENIEEYITSNKT--LKIVDLPGQERLRNKF 418
G GKT L R Y Q+ T+ + + + ++T L++ D GQER R+
Sbjct: 18 GEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 77
Query: 419 FEQ-HKSSAKGIVFVIDS----INIQKEIRDV 499
SS IV+ I + +N +K I DV
Sbjct: 78 PSYIRDSSVAIIVYDITNHNSFVNTEKWIEDV 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,193
Number of Sequences: 5004
Number of extensions: 57834
Number of successful extensions: 192
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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