Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40543
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 239 VAKSIPSRENPPKYEGYC 186
           V  +IP+ ENP  Y  +C
Sbjct: 269 VTAAIPTSENPADYRYFC 286


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 239 VAKSIPSRENPPKYEGYC 186
           V  +IP+ ENP  Y  +C
Sbjct: 269 VTAAIPTSENPADYRYFC 286


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 239 VAKSIPSRENPPKYEGYC 186
           V  +IP+ ENP  Y  +C
Sbjct: 269 VTAAIPTSENPADYRYFC 286


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 227 YSSQLSIVNGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSN 364
           Y+S  S+  GL  S + L  + LAY+  R     +   +E+ +  N
Sbjct: 270 YNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLN 315


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = -1

Query: 492 LISFCILIESITNTIPLALLLCCSKNLF 409
           L S C+L++++ N +     +   KN++
Sbjct: 12  LASLCLLVQAVPNKVADKTYVTRQKNIY 39


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 120 KIHTEPILNDPRYITLLSLIVLAVTLIFWWIFSRRYTLRNSVLLMAYQTLARLCC 284
           K  T  I+N P Y+          T I ++I  RR TL  +V L+    L    C
Sbjct: 197 KSGTWDIINVPAYLNTYKGDFPTETDITFYIIIRRKTLFYTVNLILPTVLISFLC 251


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = -1

Query: 492 LISFCILIESITNTIPLALLLCCSKNLF 409
           L S C+L++++ N +     +   KN++
Sbjct: 12  LASLCLLVQAVPNKVADKTYVTRQKNIY 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,624
Number of Sequences: 438
Number of extensions: 4219
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)