Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40542
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    28   0.60 
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   1.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.6  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   5.6  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    24   7.4  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    24   9.8  

>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 27.9 bits (59), Expect = 0.60
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 226 FNCYKDTLQSIWWTSNLSATR 288
           ++C+K  L SIWW+ +  ATR
Sbjct: 58  WDCWKRDLWSIWWSLSRKATR 78


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 3   AYHRAMDSMSRLNRIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPV 182
           A  R  +  + + +   R + K NA       G    GH   L S    + SF +H+LP 
Sbjct: 755 AKERVYNEKTSVQKFEVRWISKANADQRAGRAGRTGPGHCYRLYSSAVFDSSFPLHSLPE 814

Query: 183 IAK 191
           I +
Sbjct: 815 ILR 817


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -3

Query: 333  YPSCFSISLQYAAACSRGRQIRSPPDALERVLVAIETCSHKL--SLLLPSWQLQADYGLQ 160
            +P  FS+   Y++  SRG  ++S   A+   L+A E     +   + +    L  D   +
Sbjct: 4717 FPKLFSLDTVYSSVRSRGLTVQSVSFAVFARLLANEVKQEDVVFGIYVSGRTLDVDNIDE 4776

Query: 159  MILHSFDEMPSSVHD 115
            ++  +F+ +P  V D
Sbjct: 4777 LLFPTFNVVPLRVTD 4791


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 2   GISQSNGLYEQTQSHCSKIDAQVQCSRLNRCNWFWFTGSCTELGISSKE 148
           G+   +G  E+     S  +   +C RL +CN F F   C +  ++S +
Sbjct: 514 GVFPFSGTDERCLVCLSNFELNDECRRLKQCNHF-FHRECIDQWLTSSQ 561


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 174 DYGLQMILHSFDEMPSSVHDPVNQ 103
           DY   +I+HS D++ S +  P N+
Sbjct: 101 DYNFSIIIHSEDQVNSFIKYPFNR 124


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 371 GYPSPQYQ*SKPDILLVSQYLYST 300
           G P P+Y   KPD+ ++++Y +++
Sbjct: 154 GNPKPRYFRLKPDLSVINRYGFNS 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,094
Number of Sequences: 5004
Number of extensions: 35631
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)