Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40542
(395 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0194 + 9547626-9547715,9549235-9549311,9549493-9549564,954... 32 0.19
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 29 1.0
04_01_0452 - 5859262-5859465,5859618-5859661,5859753-5859954,586... 29 1.8
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 28 2.4
04_04_1085 - 30719921-30719960,30720206-30720351,30720469-307205... 28 2.4
07_01_0123 - 927691-929223,930050-930268 28 3.1
06_03_0186 - 17653101-17653205,17653594-17653660,17654744-176548... 27 4.1
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 27 4.1
04_03_0217 - 12769956-12770252,12770340-12770490,12770572-127708... 27 4.1
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 27 4.1
11_06_0708 + 26475306-26478404 27 7.2
11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166 27 7.2
08_02_0990 + 23374562-23376196 27 7.2
05_04_0384 - 20809397-20811547 27 7.2
05_03_0209 + 10139857-10140041,10140223-10140294,10140374-101404... 27 7.2
02_05_0018 - 25011623-25013764 27 7.2
12_01_0790 + 7216452-7216489,7216664-7216722,7217268-7218750,721... 26 9.6
07_03_1649 - 28385289-28385358,28387039-28387877 26 9.6
05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889 26 9.6
>05_03_0194 +
9547626-9547715,9549235-9549311,9549493-9549564,
9549648-9549719,9550047-9550118,9550199-9550225,
9550226-9550297,9550382-9550453,9550897-9550968,
9551047-9551121,9551226-9551297,9551384-9551449,
9551544-9551609,9551683-9551727,9551822-9551886,
9551971-9552350,9552419-9552545,9552688-9552846,
9552929-9553047,9553182-9553392,9553582-9553762,
9553845-9553995,9554086-9554448
Length = 901
Score = 31.9 bits (69), Expect = 0.19
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = -3
Query: 267 SPPDALERVLVAIETCSHKLSLLLPSWQLQADYGLQMILHSFD 139
S PDA+ L AI+ ++L+ LPSW Q ++ L ++ ++F+
Sbjct: 268 SLPDAISPSLKAIDFSYNQLTGGLPSWATQNNFQLNLVANNFE 310
>11_06_0388 +
23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 29.5 bits (63), Expect = 1.0
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -3
Query: 279 RQIRSPPDALERVLVAIETCSHKLSLLLPSWQLQADYGLQMILHSFDE-MPSSVHDPVNQ 103
+ I+ PD ++RV ++E LL +W G + S DE S++ DPVN
Sbjct: 169 KSIKDGPDGVDRVS-SLERAEIAAELLDTNWSTNPPRGAKA-RRSLDEPSKSNLEDPVNG 226
Query: 102 NQL 94
NQ+
Sbjct: 227 NQV 229
>04_01_0452 -
5859262-5859465,5859618-5859661,5859753-5859954,
5860905-5860949
Length = 164
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 279 CHENRLLRTVKILRNKKDIRLGSLVLWRRVTAQPALLIN 395
C + +L +L+NKK RL +LVL R ++ IN
Sbjct: 21 CGDENMLAMFNVLKNKKSARLENLVLARNSFSRTVYNIN 59
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 236 TRTRSRASGGLLICLPREQAAAYCKDIEKQE 328
T R A+G LL C+PREQ DI + E
Sbjct: 1528 TLYRRAANGILLKCIPREQGVVLLADIHEGE 1558
>04_04_1085 -
30719921-30719960,30720206-30720351,30720469-30720546,
30720649-30720715,30720948-30721090,30721504-30721535,
30721769-30722168,30722540-30722601,30722716-30722892,
30723078-30723201,30723590-30723760
Length = 479
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 67 STMLTAQQM*LVLVYWVMHRTWHLIKRMKYH 159
S+M+ Q+ L+++ ++R W +IK KYH
Sbjct: 448 SSMVLNHQVALIVLMEQLYRAWTIIKGQKYH 478
>07_01_0123 - 927691-929223,930050-930268
Length = 583
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 309 KILRNKKDIRLGSLVLWRRVTAQPALLIN 395
+I R ++ RLG + WRR+TA LL++
Sbjct: 43 RIWRRRRQRRLGFFLQWRRLTATFCLLLS 71
>06_03_0186 -
17653101-17653205,17653594-17653660,17654744-17654898,
17655759-17655995
Length = 187
Score = 27.5 bits (58), Expect = 4.1
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +2
Query: 161 CNP*SACNCQDGSSSESLWEHVSIATRTRSRASGG---LLICLPREQAAAYCKDIEKQEG 331
C + C C SSS LW + +A + R+ GG L LP + K I Q
Sbjct: 92 CMAEAICICSMNSSSVCLWYGMDVAGQGRADGKGGWSQLRKGLPVDLTEGILKAICMQAQ 151
Query: 332 YQAWII 349
Q W I
Sbjct: 152 GQIWKI 157
>05_01_0035 -
232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 93 VTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHAPE 254
+ G L HA L KN+V + I++ AAV +A +LL+GH +
Sbjct: 578 LAGKTLPSHAAILCGLVKNQVYSDLEVAFAISEDAAVYRALSQTIELLEGHTSQ 631
>04_03_0217 -
12769956-12770252,12770340-12770490,12770572-12770803,
12770979-12771040,12771189-12771235,12771313-12771431,
12771513-12771671,12771745-12771925,12772010-12772361,
12772673-12772717,12772789-12772854,12772951-12773016,
12773107-12773178,12773283-12773357,12773437-12773508,
12774169-12774240,12774499-12774570,12776252-12776323,
12776400-12776471,12776811-12776997,12778343-12778457
Length = 861
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 261 PDALERVLVAIETCSHKLSLLLPSWQLQADYGLQMILHSF 142
PD + L AI+ ++L+ +PSW Q + L ++ ++F
Sbjct: 282 PDGISSSLKAIDFSYNQLTGSIPSWASQNNLQLNLVANNF 321
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 63 HKYNAHGSTDVTGFGLLGHA-QNLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQ 239
++YN +V G H Q+L ++ + I+N AK++ ++ AC Q L+
Sbjct: 243 NRYNGPIHNEVPGLAYQPHLEQHLGGGRQTQAQHSINN----AKISVIS-ACDLFKQPLR 297
Query: 240 GHAPEHLV 263
G P+H+V
Sbjct: 298 GSRPDHIV 305
>11_06_0708 + 26475306-26478404
Length = 1032
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 165 LQMILHSFDEMPSSVHDPVNQNQLHLLSREHC 70
LQ + SFD+ +HD + Q H LSRE C
Sbjct: 475 LQPVDTSFDQSKCKMHDLLRQLACH-LSREEC 505
>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
Length = 940
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 165 LQMILHSFDEMPSSVHDPVNQNQLHLLSREHC 70
LQ + SFD+ +HD + Q H LSRE C
Sbjct: 475 LQPVDTSFDQSKCKMHDLLRQLACH-LSREEC 505
>08_02_0990 + 23374562-23376196
Length = 544
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 168 GLQMILHSFDEMPSSVHDPVNQNQLHL 88
GL ++L S DE+ +HD V Q HL
Sbjct: 417 GLLILLQSGDEISIVIHDDVTQEVSHL 443
>05_04_0384 - 20809397-20811547
Length = 716
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -3
Query: 333 YPSCFSISLQYAAACSRGRQIRSPPDALERVLVAIETCSHKLSLL--LPSW 187
YP + + A G + RSP + L +VLVAI H LL L W
Sbjct: 658 YPLYRFVREELGTAYLTGEKTRSPGEELNKVLVAINQGKHIDPLLECLKEW 708
>05_03_0209 +
10139857-10140041,10140223-10140294,10140374-10140445,
10141095-10141166,10141427-10141498,10141628-10141663,
10141958-10142029,10142107-10142181,10142449-10142514,
10142610-10142675,10142748-10142792,10142882-10142946,
10143066-10143445,10143530-10143728,10143801-10143959,
10144042-10144160,10144294-10144504,10145336-10145567,
10145650-10145800,10145899-10146162
Length = 870
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 261 PDALERVLVAIETCSHKLSLLLPSWQLQADYGLQMILHSF 142
PD + L AI+ ++L+ PSW Q + L ++ ++F
Sbjct: 231 PDGISSSLKAIDFSYNQLTGSFPSWASQNNLQLNLVANNF 270
>02_05_0018 - 25011623-25013764
Length = 713
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -3
Query: 333 YPSCFSISLQYAAACSRGRQIRSPPDALERVLVAIETCSHKLSLL--LPSW 187
YP + + A G + RSP + L +VLVAI H LL L W
Sbjct: 655 YPLYRFVREELGTAYLTGEKTRSPGEELNKVLVAINQGKHIDPLLECLKEW 705
>12_01_0790 +
7216452-7216489,7216664-7216722,7217268-7218750,
7218828-7218892,7219023-7219080,7219152-7219262,
7219332-7219410,7219521-7219613,7219701-7219886
Length = 723
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +2
Query: 2 GISQSNGLYEQTQSHCSKIDAQVQCSRLNRCNWFW 106
G Q Y++ + +ID+Q + + + CN +W
Sbjct: 103 GFKQDAYTYKKRDRYKEEIDSQARAAACDECNIYW 137
>07_03_1649 - 28385289-28385358,28387039-28387877
Length = 302
Score = 26.2 bits (55), Expect = 9.6
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 57 LMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLL 236
LM + AHG + L A L + +++ V+H + +AAVA + L+
Sbjct: 12 LMFPWLAHGHINP----YLELATRLTTTSSSQIDVVVHLVSTPVNLAAVAHRRTDRISLV 67
Query: 237 QGHAPE 254
+ H PE
Sbjct: 68 ELHLPE 73
>05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889
Length = 493
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Frame = +2
Query: 77 SRLNRCN-WFWFTGSC 121
+R NR N W+WF G+C
Sbjct: 44 ARFNRRNCWYWFKGNC 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,984,978
Number of Sequences: 37544
Number of extensions: 249722
Number of successful extensions: 772
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -