Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40542
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   2.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   3.9  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              20   9.0  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 158 ICNP*SACNCQDGSSSES 211
           +  P +  NC  GSSS+S
Sbjct: 9   LATPRTGTNCSSGSSSDS 26


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 5   ISQSNGLYEQTQSHCSKID 61
           I+    LYEQ  S C ++D
Sbjct: 513 INMLQNLYEQFDSFCGQLD 531


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 194 GSSSESLWEHVSIAT 238
           G +SES WE V+ +T
Sbjct: 85  GGTSESQWEDVTGST 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,221
Number of Sequences: 438
Number of extensions: 2362
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)