Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40539
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 101 1e-22
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 99 3e-22
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 80 3e-16
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 69 9e-13
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 60 3e-10
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 30 0.39
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 0.90
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 27 2.1
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 2.1
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 3.6
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 3.6
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 3.6
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 4.8
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 26 4.8
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ... 26 6.4
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 6.4
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 25 8.4
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 25 8.4
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy... 25 8.4
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 101 bits (241), Expect = 1e-22
Identities = 48/61 (78%), Positives = 52/61 (85%)
Frame = +1
Query: 547 PTGAAWVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK 726
P VPQIEVTFD+DANGILNVSA+EK T K KITITNDKGRLSKEEI+RMV+EAEK
Sbjct: 463 PPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAEK 522
Query: 727 Y 729
Y
Sbjct: 523 Y 523
Score = 53.6 bits (123), Expect = 3e-08
Identities = 27/43 (62%), Positives = 28/43 (65%)
Frame = +3
Query: 381 VMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTK 509
VMT LIKRN Y+DNQPGVLIQVFEGERA TK
Sbjct: 407 VMTPLIKRNTTIPTKKSEVFSTYADNQPGVLIQVFEGERARTK 449
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2
Query: 506 QDNNLLGKFELTGIPPAPRG 565
+D NLLGKFEL+GIPPAPRG
Sbjct: 449 KDCNLLGKFELSGIPPAPRG 468
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 99 bits (238), Expect = 3e-22
Identities = 48/61 (78%), Positives = 51/61 (83%)
Frame = +1
Query: 547 PTGAAWVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK 726
P VPQIEVTFD+DANGILNVSA+EK T K KITITNDKGRLSKEEI+RMV EAEK
Sbjct: 463 PPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAEK 522
Query: 727 Y 729
Y
Sbjct: 523 Y 523
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/43 (65%), Positives = 28/43 (65%)
Frame = +3
Query: 381 VMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTK 509
VMT LIKRN YSDNQPGVLIQVFEGERA TK
Sbjct: 407 VMTPLIKRNTTIPTKKSEIFSTYSDNQPGVLIQVFEGERARTK 449
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2
Query: 506 QDNNLLGKFELTGIPPAPRG 565
+D NLLGKFEL+GIPPAPRG
Sbjct: 449 KDCNLLGKFELSGIPPAPRG 468
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 80.2 bits (189), Expect = 3e-16
Identities = 38/62 (61%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Frame = +1
Query: 547 PTGAAWVPQIEVTFDIDANGILNVSAIEKS-TNKENKITITNDKGRLSKEEIERMVNEAE 723
P VPQIEVTF++DANG+L VSA++KS K K+ I NDKGRLS+E+IERMV EAE
Sbjct: 492 PPAPRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKEAE 551
Query: 724 KY 729
++
Sbjct: 552 EF 553
Score = 42.3 bits (95), Expect = 7e-05
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2
Query: 506 QDNNLLGKFELTGIPPAPRG 565
+DNNLLGKF+L GIPPAPRG
Sbjct: 478 KDNNLLGKFDLRGIPPAPRG 497
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/43 (48%), Positives = 23/43 (53%)
Frame = +3
Query: 381 VMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTK 509
VMT LI RN DNQ VLIQV+EGER +TK
Sbjct: 436 VMTKLIGRNTPIPTRKSQIFSTAVDNQNTVLIQVYEGERTLTK 478
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 68.5 bits (160), Expect = 9e-13
Identities = 32/54 (59%), Positives = 43/54 (79%)
Frame = +1
Query: 568 PQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKY 729
PQIEV+FD+DA+GI+NVSA +K+TNK++ IT+ G L+ EIE MV +AEKY
Sbjct: 513 PQIEVSFDVDADGIINVSARDKATNKDSSITVAGSSG-LTDSEIEAMVADAEKY 565
Score = 35.1 bits (77), Expect = 0.010
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2
Query: 506 QDNNLLGKFELTGIPPAPRG 565
+DN L+G F+LTGI PAP+G
Sbjct: 492 RDNKLIGNFQLTGIAPAPKG 511
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 381 VMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTK 509
V T LI RN +D Q V I+VF+GER + +
Sbjct: 450 VFTRLINRNTTIPTRKSQVFSTAADGQTAVEIRVFQGERELVR 492
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 60.1 bits (139), Expect = 3e-10
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +1
Query: 571 QIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKY 729
++E TF++DANGIL V+A+EK+T + I ITN G LS +I+ M+ A+K+
Sbjct: 476 ELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKIQEMIENADKF 528
Score = 34.3 bits (75), Expect = 0.018
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 509 DNNLLGKFELTGIPPAPRGCLKL 577
+N LG+F+LTGIPP PRG +L
Sbjct: 455 ENEPLGEFQLTGIPPMPRGQAEL 477
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 595 DANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNE 717
D LNVS + S +E +T ++ R+ +EE +RM ++
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRMASK 98
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 0.90
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -3
Query: 219 STEHYEPEYDRSSYYKMPDMVKKFL---VYFRNMINEGVTYEILNLYENTFPTLTEKYFE 49
S E + + + + + D+V + + V I+ G YE++NL ++ +T+ +
Sbjct: 397 SNEIQKQWHKKDDFTEYEDIVHELIELPVVCAQSIDGGCVYEVINLVQSVLRRVTKLFQL 456
Query: 48 NTPWPDEDEVSPIVD 4
PW D+ +D
Sbjct: 457 KEPWKLSDDSQEKID 471
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 207 YEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTY 106
+E YD S + DM KK L+ FRN +G+ Y
Sbjct: 327 FEDAYDIISKLSVSDMKKKLLIRFRN--EDGLDY 358
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 603 RYPQRFRYREVHQQGEQDHHYQRQRSS-LQGRDRAY 707
R P R +YRE H + + H R QGR +Y
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSY 355
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +3
Query: 132 CESKQG-IS*PCQAFYNKKTCHIPARSVLWTVLH--SRHRIRNLLIIIVAGIHGC 287
CESK G I + FY KTC + + S L + H+ + AG GC
Sbjct: 92 CESKCGHIFRKGEVFYRCKTCSVDSNSALCVKCFRATSHKDHETSFTVSAGSGGC 146
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 166 RHFIIRRPVIFRLVVFCGLCFIVAIGFVTSSL*SSLEYMVVNRI*QYSYVRVYASERVFN 345
R I+R+P +F++ LC I A+ + + + + I Y++VRV R+F
Sbjct: 470 REVILRKPEVFKMACLRDLCNIFALPVPRTPFYAGFGNRITDAI-SYNHVRV-PPTRIFT 527
Query: 346 L 348
+
Sbjct: 528 I 528
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 640 NKENKITITNDKGRLSKEEIERMVNEAE 723
NK+ K T D SKEE+E +V E E
Sbjct: 529 NKKGKHTQIEDPTAASKEELENLVREDE 556
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 673 KGRLSKEEIERMVNEAEK 726
KG LSKEE+ER V +A K
Sbjct: 525 KGTLSKEELERRVYDAAK 542
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 406 TLPSPLNRLRHSPPTLITNPEYSSKYLR 489
T P RLRH+P I E KYLR
Sbjct: 43 TYGQPFKRLRHAPEKYIEFLELRLKYLR 70
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -3
Query: 132 NMINEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVSPIVD 4
+MI+ + + LNL +T LT ++E + + D+D V+ +++
Sbjct: 795 SMISANLMNDSLNLKVSTIFALTRIFYEFSDYIDDDYVNAVLE 837
>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 124 NHVAKVNKEFLDHVRHFIIRRPVIFRLVVF 213
NH + KEFL+H ++ + R + LV F
Sbjct: 14 NHFSDDQKEFLNHAKYRVKRNTIFGMLVGF 43
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = -3
Query: 213 EHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPWP 34
+ Y +Y ++ Y + F+V F+++ + +LN N F L ++ E+ P
Sbjct: 50 DRYTMQYQEATQYSIV-----FVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLEDRQVP 104
Query: 33 DEDEVSPI 10
+E EV +
Sbjct: 105 NEAEVEKL 112
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/44 (22%), Positives = 20/44 (45%)
Frame = +1
Query: 64 SECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRHFIIRRPVI 195
++CG G+L + L+ ++ H + D H + PV+
Sbjct: 681 TQCGSGVLTDDDGLVVALWLTHYGEQTSRGTDVKYHLGLASPVV 724
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 565 VPQIEVTFDIDANGILNVSAIEKSTNKENKITITN-DKGRLSKEEIERMVNEAEK 726
+P TF NG++N+S + ++ N E + DKGR + + ++ E K
Sbjct: 122 IPVKRGTFIEFRNGMINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFK 176
>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 129 MINEGVTYEILNLYENTFPTLTEKYFENTPWPD 31
+I +G TY + L+ P L +K EN P D
Sbjct: 41 LIIKGETYHLHALFLGRSPVLLQKLIENNPKGD 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,301
Number of Sequences: 5004
Number of extensions: 55650
Number of successful extensions: 221
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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