Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40539
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.9  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   5.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   5.2  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   5.2  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   5.2  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   5.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 587 KVTSI*GTHAAPVGSRSARIYRASCYLGHSTLT 489
           K+  + G H    G  +  I+R SC   HS LT
Sbjct: 401 KLEFVVGQHRILKGPANPDIFRVSCATEHSQLT 433


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 587 KVTSI*GTHAAPVGSRSARIYRASCYLGHSTLT 489
           K+  + G H    G  +  I+R SC   HS LT
Sbjct: 107 KLEFVVGQHRILKGPANPDIFRVSCATEHSQLT 139


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 147 LVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTP 40
           LVY  +  NEG    I N  +N+F  LT   F + P
Sbjct: 200 LVYIGD--NEGFALIIYNNSDNSFQRLTSSTFASDP 233


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 448 TLITNPEYSSKYLR 489
           T I N  YSSKY+R
Sbjct: 199 TYIVNTNYSSKYMR 212


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = -3

Query: 195 YDRSSYYKMPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVS 16
           Y R   Y   DM  +   Y+++  + G   + +  Y +  P+    +  +TP P+    +
Sbjct: 77  YPRFPPYNRMDM--RNATYYQHQQDHGSGMDGMGGYRSASPSPGMGHMGHTPTPNGHPST 134

Query: 15  PIV 7
           PIV
Sbjct: 135 PIV 137


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 660 HYQRQRSSLQGRDRAY 707
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 660 HYQRQRSSLQGRDRAY 707
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 660 HYQRQRSSLQGRDRAY 707
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 660 HYQRQRSSLQGRDRAY 707
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 660 HYQRQRSSLQGRDRAY 707
           HY R+RS  + R+R Y
Sbjct: 219 HYSRERSCSRDRNREY 234


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 660 HYQRQRSSLQGRDRAY 707
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 600 QRYPQRFRYREVHQ-QGEQDHHYQRQRSSLQGRDR 701
           +RY  R R RE +  + E+++   R+RS  + RDR
Sbjct: 270 KRY-SRSREREQNSYKNEREYRKYRERSKERSRDR 303


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 473 EYSGLVIRVGGECLSLFSGDGSVTLDECGHDTKLRM 366
           E+ G+   +G   ++L SG+    LD  GH   + M
Sbjct: 174 EFGGITQCIGAFDVTLESGERVTFLDTPGHAAFISM 209


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 564 PRGAGGIPVS 535
           PRG GG+P S
Sbjct: 399 PRGPGGVPTS 408


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 403  VTLPSPLNRLRHSPP 447
            +T PSP  R R++PP
Sbjct: 986  MTDPSPFKRGRYTPP 1000


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,186
Number of Sequences: 438
Number of extensions: 3718
Number of successful extensions: 20
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)