Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40537
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    29   0.91 
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    28   1.6  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    27   2.8  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   4.9  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    26   6.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.4  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    26   6.4  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    26   6.4  

>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 182 WLGLKIKDTVRLYNSEVKVHNNEKEYIYFLTKTNLKT 292
           W G  +   V++YNS  ++     E  YF+TK  ++T
Sbjct: 155 WNGTYLASNVQIYNSSNELEQFGGESTYFITKHGVRT 191


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +1

Query: 262 IFSYENQPENIHVNDFIQTIESITEDFKIGFQYAVMCKIVLECTISAAKKQYLLIWIMDK 441
           +F  +  P N+H   +  TIE I+++ +    + VM     EC   A   ++L    + K
Sbjct: 629 LFPSQLLPGNLHDQFYSPTIEKISDELERKLVFPVMS----ECKDYAEGPKFLQTRYISK 684

Query: 442 ELQVLKNKENVTNNKIELK 498
           + ++   K     N++ LK
Sbjct: 685 QSEIESKKPLPKANRLSLK 703


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = +2

Query: 50  VIKQNKLDFLYRLTYFVIDGSILSEKSNKFN-----SKREVYHCS 169
           V+KQ+KL   Y    FV++ +   ++S K N     S++  YHCS
Sbjct: 148 VLKQHKLGHEYGKALFVLNDNYFEDESLKNNNLLLASRQLGYHCS 192


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 183 QAKQRLQWYTSLLELNLFDFSDKIDPSITKYVNRYRKSNLFCF-ITTSASF-PW 28
           Q K+  + + S+L+ +    S  I  S+  YVN+ ++    CF I  + SF PW
Sbjct: 340 QFKEFYELWNSILQNHFIISSRNIIDSLGLYVNKIKEKLQICFEIPPTNSFDPW 393


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -1

Query: 286 QVGFRKKIYVLFFIVMYFNFRIVKSDSVFDFETEPSQTAAAMVYLPFRIKFV 131
           +VG  +  ++ F    YFN R +KS S+       + T  +++ +P ++ F+
Sbjct: 106 RVGCMELAFISFSAACYFNIRSIKSLSL----KNKNWTIISIIEIPIKLHFI 153


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 90   HISLLMDQSYQRSRTNLILKGRYTIAAAVWLGSVSKSKTLSDFTILKLKY 239
            H SLL + S   ++ NLIL  RY +  +++L      K     T L L Y
Sbjct: 2624 HSSLLAEDS--STKMNLILLQRYAVIISIFLDQGKCEKANDLITKLSLPY 2671


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 367 MCKIVLECTISAAKKQYLLIWIMDKELQVLKNKENVTNNKIELKSSFV 510
           +C  +     S +K  +  +   +K+LQV+ NK+N+   + E+K  F+
Sbjct: 86  VCGRISSIRYSGSKLAFFDVLYGNKKLQVVFNKKNIGTEE-EMKGKFI 132


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 373 KIVLECTISAAKKQYLLIWIMDKELQVLK 459
           K++L C +S  KK+Y   W+++ E +V K
Sbjct: 21  KLILGC-MSYGKKEYWEDWVLEDEEEVFK 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,651
Number of Sequences: 5004
Number of extensions: 65600
Number of successful extensions: 224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)