Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40536
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       29   0.37 
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    28   0.84 
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    27   1.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   1.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.9  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   7.9  

>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -3

Query: 276 EVTYSIWL----LIIYLTTSYLRRIMLCVARLCYYVSQNYFL 163
           E+T+ +++    L+I + T Y RRI+ C A LC  +   Y+L
Sbjct: 27  EITFKVYISIRRLLIVVITLY-RRIVECCASLCSLIFSKYYL 67


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -2

Query: 268 LQHLVTYNLPYHKLFETHNALRSSAMLLCVTKLLPNTFTDTNDVSLKLT*G*SLRRVHL- 92
           L  L  Y L   K FET N      M+  V    P T TD   ++ KL  G    RVHL 
Sbjct: 20  LTSLFNYLLQNWKSFETCNTKERELMVQQVDSKKPETPTDLEPLANKLE-GPLSERVHLN 78

Query: 91  --IDFDPLEMVN 62
             +D++ L   N
Sbjct: 79  TTLDYEVLRGQN 90


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 196 PSYAKHYASQITCGKVNYK*PNAVGNFNNSIVICLVDTSTKARLL*C 336
           P YAK Y  + T     ++   AVG+F  ++ +   D + + +L  C
Sbjct: 70  PEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLREC 116


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 90   LILTHWRWSILKIIKFTLGTLLR 22
            L+  H RWS +++ K+ LGT  +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 381  IYWAYVHFDISSVTND 428
            I+W++V  D+S+ TND
Sbjct: 1138 IFWSFVSKDLSNTTND 1153


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 256 VTYN-LPYHKLFETHNALRSSAMLLCVTKLLPNTFTDTNDVSLKLT 122
           +TYN +P  K+FE    +     LL + + LP+  T   ++ L+LT
Sbjct: 372 LTYNNVPISKVFEEELGIGGVISLLWLRRRLPSYATKFLEMVLQLT 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,917
Number of Sequences: 5004
Number of extensions: 31230
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)