Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40536
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.3  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   3.9  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -3

Query: 297 TYHNGIVEVTYSIWLLIIYLTTSYLRRIMLCVARLCYYVSQNYFL 163
           TY NG+      IW         Y+R IM   +R+   +   Y L
Sbjct: 300 TYSNGLPFPQRPIWSNFPIYKYKYIREIMNKESRISAAIDSGYIL 344


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -3

Query: 297 TYHNGIVEVTYSIWLLIIYLTTSYLRRIMLCVARLCYYVSQNYFL 163
           TY NG+      IW         Y+R IM   +R+   +   Y L
Sbjct: 300 TYSNGLPFPQRPIWSNFPIYKYKYIREIMNKESRISAAIDSGYIL 344


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 190 LLCVTKLLPNTFTDTNDVSLK 128
           ++C +KLL + + DT + +LK
Sbjct: 135 IICFSKLLSDMYEDTFEDTLK 155


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 16 SRPEECP*CKFN 51
          + P+ECP C+ N
Sbjct: 3  NEPQECPYCRRN 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,748
Number of Sequences: 438
Number of extensions: 2468
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)