Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40534
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 129 4e-31
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 129 4e-31
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 28 1.0
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 28 1.4
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 2.4
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 3.1
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 7.2
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 7.2
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 25 9.5
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 9.5
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.5
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 129 bits (311), Expect = 4e-31
Identities = 59/85 (69%), Positives = 69/85 (81%)
Frame = +1
Query: 1 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 180
RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+GN
Sbjct: 5 RDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGN 64
Query: 181 FSWGSECSTRKTRIIDVVYNASNND 255
FSWGSE ++KTRII V Y+ SNN+
Sbjct: 65 FSWGSEGVSKKTRIIQVAYHPSNNE 89
Score = 72.5 bits (170), Expect = 5e-14
Identities = 41/84 (48%), Positives = 51/84 (60%)
Frame = +3
Query: 255 LVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 434
LVRT TL K+AIV +DA PFR WYE+HY + +G KG K T +S+ RK+
Sbjct: 90 LVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKH 143
Query: 435 LARQRLAKVEGALEEQFHTGRLLA 506
AR +KV+ ALE QF GRL A
Sbjct: 144 SARLGDSKVDSALETQFAAGRLYA 167
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +2
Query: 491 GAFAGLVASRPGQCGRADGYILEGKELEFYLRKIKSKR 604
G +V+SRPGQ GR DGYILEG+EL FYLR++ K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 129 bits (311), Expect = 4e-31
Identities = 59/85 (69%), Positives = 69/85 (81%)
Frame = +1
Query: 1 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 180
RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+GN
Sbjct: 5 RDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGN 64
Query: 181 FSWGSECSTRKTRIIDVVYNASNND 255
FSWGSE ++KTRII V Y+ SNN+
Sbjct: 65 FSWGSEGVSKKTRIIQVAYHPSNNE 89
Score = 71.7 bits (168), Expect = 8e-14
Identities = 41/84 (48%), Positives = 51/84 (60%)
Frame = +3
Query: 255 LVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 434
LVRT TL K+AIV +DA PFR WYE+HY + +G KG K T +S+ RK+
Sbjct: 90 LVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKH 143
Query: 435 LARQRLAKVEGALEEQFHTGRLLA 506
AR +KV+ ALE QF GRL A
Sbjct: 144 SARLGDSKVDSALETQFAAGRLYA 167
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +2
Query: 491 GAFAGLVASRPGQCGRADGYILEGKELEFYLRKIKSKR 604
G +V+SRPGQ GR DGYILEG+EL FYLR++ K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +1
Query: 1 RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 174
RD +K + G K+ + EL +N + Q+ + S T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142
Query: 175 GNFSWGSECSTRKTRI 222
G+ E + K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 4 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 165
+ W K T K+ +KRK L R A RL + + S+ S+GG +A +
Sbjct: 32 EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.1 bits (57), Expect = 2.4
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Frame = +1
Query: 4 DHWHKRRATGGKRAPIRKKRKY-----ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 168
D W +A G +PIR+ ++Y + +PA R H R K R + +
Sbjct: 758 DEWKASKAFGANDSPIRENKRYKHNKLQTPKPADKFR---DNYHKQNKRNREAKERGIGI 814
Query: 169 DTGNFSWGSECSTRKTRIIDVVYNASNN 252
N S RK R + A NN
Sbjct: 815 KV-NSELKSAVEIRKARELKEKRLAKNN 841
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +3
Query: 303 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 482
+TP + H KKG+K+ A++ ++R + AR+ A + K ++E+
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813
Query: 483 FHTGRLLA 506
+LA
Sbjct: 814 TDPQTILA 821
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 248 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 162
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 541 GATTLTWATRHQASKRPVWNCSSRAPS 461
G+ T W + SK P WN SR P+
Sbjct: 833 GSRTPAW---NSGSKTPAWNSGSRTPA 856
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 217 RIIDVVYNASNNDWCVQRPLSR 282
R+I V Y NDW V + L R
Sbjct: 122 RVISVCYFEQENDWWVSKHLKR 143
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 95 PGSVLSVSTPFVHVVEILSTVRCVWTPVTSLG 190
P VLS P++ + L + C+W P LG
Sbjct: 682 PILVLSTMKPYLCNITFLGSHLCIWQPKILLG 713
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 507 WWRVAQVSVVAPMVTS*KAKNSSSI 581
WW V QVSV+ +VT + SS I
Sbjct: 106 WWIVIQVSVITIVVTFASSVYSSGI 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,913
Number of Sequences: 5004
Number of extensions: 50279
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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