Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40534
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 128 3e-30
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 128 4e-30
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.26
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.4
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 3.2
11_01_0551 + 4361640-4363386,4363443-4363687 29 4.3
04_03_0549 - 17043135-17043351,17043641-17043846 29 4.3
09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965... 28 5.6
04_03_0668 - 18516366-18516639,18517348-18517379,18517939-185179... 28 5.6
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 7.5
11_01_0307 + 2304500-2306023 28 7.5
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 7.5
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 128 bits (310), Expect = 3e-30
Identities = 61/86 (70%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTG 177
RD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTG
Sbjct: 5 RDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTG 64
Query: 178 NFSWGSECSTRKTRIIDVVYNASNND 255
N+SWGSE TRKTRI+DVVYNASNN+
Sbjct: 65 NYSWGSEAVTRKTRILDVVYNASNNE 90
Score = 64.9 bits (151), Expect = 5e-11
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +2
Query: 491 GAFAGLVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 610
G ++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 195 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
Score = 63.7 bits (148), Expect = 1e-10
Identities = 44/109 (40%), Positives = 57/109 (52%), Gaps = 25/109 (22%)
Frame = +3
Query: 255 LVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGA---------------------- 368
LVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 91 LVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLY 150
Query: 369 ---KLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLA 506
K +AE K+S RK RQ+ ++ +EEQF +GRLLA
Sbjct: 151 VMLKGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLA 199
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 128 bits (309), Expect = 4e-30
Identities = 61/86 (70%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTG 177
RD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTG
Sbjct: 5 RDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTG 64
Query: 178 NFSWGSECSTRKTRIIDVVYNASNND 255
N+SWGSE TRKTRI+DVVYNASNN+
Sbjct: 65 NYSWGSEAVTRKTRILDVVYNASNNE 90
Score = 79.0 bits (186), Expect = 3e-15
Identities = 44/92 (47%), Positives = 57/92 (61%), Gaps = 8/92 (8%)
Frame = +3
Query: 255 LVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKR 410
LVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A+ E E A K+
Sbjct: 91 LVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKK 150
Query: 411 SQKTARKYLARQRLAKVEGALEEQFHTGRLLA 506
S RK RQ+ ++ +EEQF +GRLLA
Sbjct: 151 SNHVVRKLEKRQQTRTLDSHIEEQFGSGRLLA 182
Score = 64.9 bits (151), Expect = 5e-11
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +2
Query: 491 GAFAGLVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 610
G ++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 178 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +1
Query: 61 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 195
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 16 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 165
KRR GG+RA R+K + E GR A R G R R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 16 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 150
KRR GG+RA R+K + E GR A R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 16 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 150
+RR GG+RA R+K + E GR A R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 200 VQLAKPVSLMLCIMHLTMIGAYKDPCQECNC-CSR 301
+ L++P I+ L A+ +PC+ECN C R
Sbjct: 549 IPLSQPEGDQSAILSLASASAFAEPCEECNLPCQR 583
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 357 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLA-WWRVAQVSV 533
+ G+ T+A E+I KK+ + +K + + A V A EE+ G + WR+ S
Sbjct: 289 QNGSFTTQAAESIKEKKKRAEKKKKKKKKVKAASVAAAAEEEGGGGGAASLGWRLCNTSA 348
Query: 534 VAPMV 548
A +
Sbjct: 349 GADYI 353
>04_03_0549 - 17043135-17043351,17043641-17043846
Length = 140
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = -1
Query: 338 IMRLIPLPEWSCIYYNNCILDKGLCTHQSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRS 159
++ L+ +P+WS +YY N +DK L + S++ A + R ++ + KL + +
Sbjct: 72 LILLLLVPKWSIVYYLNSKIDKKL-YNWSMIGAALNDAWNRYVQKDRRHKAGKLKLGHK- 129
Query: 158 ARYLVFPPRER 126
+ FP R++
Sbjct: 130 ---IDFPVRQQ 137
>09_04_0088 +
14494711-14494931,14496309-14496399,14496496-14496571,
14496671-14496755,14497381-14497450,14499111-14499316,
14499434-14499508,14501043-14501133,14501400-14501441,
14501661-14501741,14502010-14502089,14502254-14502365
Length = 409
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 387 EAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLAWWRVAQVS 530
E ++ K R++K Y++ +K++ H RL+AWW + + S
Sbjct: 216 ERLVTKLRAKKITDGYISFS--SKIDELFMMMQHGSRLIAWWSIDEDS 261
>04_03_0668 -
18516366-18516639,18517348-18517379,18517939-18517983,
18518454-18518681
Length = 192
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 402 KKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLAWWRVAQVSVVA 539
K+R+ + +Y+A R A++EG E G+ + WW + + A
Sbjct: 144 KRRAARRREQYVAEARAARLEGLKRE--IRGKAVDWWSAHKKAAAA 187
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 1 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 123
R H T G+ P + Y LG P A +GP +H+
Sbjct: 210 RPETHTFHLTVGEMVPTLQDVSYLLGLPIAGAAVGPTMVHA 250
>11_01_0307 + 2304500-2306023
Length = 507
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 565 FAF*DVTIGATTLTWATRHQASKRPVWNCS 476
FAF + +GA +L A H AS PVW +
Sbjct: 67 FAFGFLRVGAASLDLAVVHLASSFPVWRAT 96
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 360 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 491
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,775,688
Number of Sequences: 37544
Number of extensions: 365153
Number of successful extensions: 1117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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