Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40534
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 162 1e-39
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 162 1e-39
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 162 1e-39
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 162 1e-39
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 126 7e-29
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 70 8e-12
AJ250854-1|CAC03757.1| 215|Homo sapiens cAMP-specific phosphodi... 29 3.0
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 31 4.7
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 31 4.7
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 31 4.7
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 31 4.7
BT007398-1|AAP36062.1| 219|Homo sapiens phosphodiesterase 4D, c... 28 5.1
BC008390-1|AAH08390.1| 219|Homo sapiens PDE4D protein protein. 28 5.1
BC013902-1|AAH13902.1| 486|Homo sapiens FAD-dependent oxidoredu... 30 8.3
AF103801-1|AAF02421.1| 486|Homo sapiens unknown protein. 30 8.3
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 162 bits (393), Expect = 1e-39
Identities = 71/85 (83%), Positives = 77/85 (90%)
Frame = +1
Query: 1 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 180
RD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GN
Sbjct: 5 RDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGN 64
Query: 181 FSWGSECSTRKTRIIDVVYNASNND 255
FSWGSEC TRKTRIIDVVYNASNN+
Sbjct: 65 FSWGSECCTRKTRIIDVVYNASNNE 89
Score = 126 bits (304), Expect = 7e-29
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = +3
Query: 255 LVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 434
LVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 90 LVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
Query: 435 LARQRLAKVEGALEEQFHTGRLLA 506
R++ AK+ LEEQF G+LLA
Sbjct: 150 DERKKNAKISSLLEEQFQQGKLLA 173
Score = 69.7 bits (163), Expect = 8e-12
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = +2
Query: 491 GAFAGLVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 610
G +ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 169 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 162 bits (393), Expect = 1e-39
Identities = 71/85 (83%), Positives = 77/85 (90%)
Frame = +1
Query: 1 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 180
RD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GN
Sbjct: 5 RDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGN 64
Query: 181 FSWGSECSTRKTRIIDVVYNASNND 255
FSWGSEC TRKTRIIDVVYNASNN+
Sbjct: 65 FSWGSECCTRKTRIIDVVYNASNNE 89
Score = 126 bits (304), Expect = 7e-29
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = +3
Query: 255 LVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 434
LVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 90 LVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
Query: 435 LARQRLAKVEGALEEQFHTGRLLA 506
R++ AK+ LEEQF G+LLA
Sbjct: 150 DERKKNAKISSLLEEQFQQGKLLA 173
Score = 69.7 bits (163), Expect = 8e-12
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = +2
Query: 491 GAFAGLVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 610
G +ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 169 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 162 bits (393), Expect = 1e-39
Identities = 71/85 (83%), Positives = 77/85 (90%)
Frame = +1
Query: 1 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 180
RD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GN
Sbjct: 5 RDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGN 64
Query: 181 FSWGSECSTRKTRIIDVVYNASNND 255
FSWGSEC TRKTRIIDVVYNASNN+
Sbjct: 65 FSWGSECCTRKTRIIDVVYNASNNE 89
Score = 126 bits (304), Expect = 7e-29
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = +3
Query: 255 LVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 434
LVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 90 LVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
Query: 435 LARQRLAKVEGALEEQFHTGRLLA 506
R++ AK+ LEEQF G+LLA
Sbjct: 150 DERKKNAKISSLLEEQFQQGKLLA 173
Score = 69.7 bits (163), Expect = 8e-12
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = +2
Query: 491 GAFAGLVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 610
G +ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 169 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 162 bits (393), Expect = 1e-39
Identities = 71/85 (83%), Positives = 77/85 (90%)
Frame = +1
Query: 1 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 180
RD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GN
Sbjct: 5 RDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGN 64
Query: 181 FSWGSECSTRKTRIIDVVYNASNND 255
FSWGSEC TRKTRIIDVVYNASNN+
Sbjct: 65 FSWGSECCTRKTRIIDVVYNASNNE 89
Score = 126 bits (304), Expect = 7e-29
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = +3
Query: 255 LVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 434
LVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 90 LVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
Query: 435 LARQRLAKVEGALEEQFHTGRLLA 506
R++ AK+ LEEQF G+LLA
Sbjct: 150 DERKKNAKISSLLEEQFQQGKLLA 173
Score = 69.7 bits (163), Expect = 8e-12
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = +2
Query: 491 GAFAGLVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 610
G +ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 169 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 126 bits (304), Expect = 7e-29
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = +3
Query: 255 LVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 434
LVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 70 LVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKY 129
Query: 435 LARQRLAKVEGALEEQFHTGRLLA 506
R++ AK+ LEEQF G+LLA
Sbjct: 130 DERKKNAKISSLLEEQFQQGKLLA 153
Score = 101 bits (243), Expect = 2e-21
Identities = 54/85 (63%), Positives = 60/85 (70%)
Frame = +1
Query: 1 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 180
RD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 5 RDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG------------- 51
Query: 181 FSWGSECSTRKTRIIDVVYNASNND 255
C TRKTRIIDVVYNASNN+
Sbjct: 52 ------C-TRKTRIIDVVYNASNNE 69
Score = 69.7 bits (163), Expect = 8e-12
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = +2
Query: 491 GAFAGLVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 610
G +ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 149 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 188
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 69.7 bits (163), Expect = 8e-12
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = +2
Query: 491 GAFAGLVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 610
G +ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 41 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 80
Score = 52.4 bits (120), Expect = 1e-06
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = +3
Query: 372 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLA 506
LT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLA
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA 45
>AJ250854-1|CAC03757.1| 215|Homo sapiens cAMP-specific
phosphodiesterase 4D protein.
Length = 215
Score = 29.1 bits (62), Expect(2) = 3.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 113 VSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMIGAY 265
+ TPF V+ L TVR + +T+L DR P+ I T+ G Y
Sbjct: 158 IVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATITGLY 208
Score = 21.0 bits (42), Expect(2) = 3.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 83 PLQTPGSVLSVSTPFVH 133
P+ +PGS L + FVH
Sbjct: 104 PMTSPGSGLILQANFVH 120
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 351 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 497
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 351 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 497
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 351 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 497
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.7 bits (66), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 351 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 497
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BT007398-1|AAP36062.1| 219|Homo sapiens phosphodiesterase 4D,
cAMP-specific (phosphodiesterase E3 dunce homolog,
Drosop protein.
Length = 219
Score = 28.3 bits (60), Expect(2) = 5.1
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 113 VSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMIGAYKD 271
+ TPF V+ L TVR + +T+L DR P+ I T+ G++ +
Sbjct: 158 IVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATITGSWME 210
Score = 21.0 bits (42), Expect(2) = 5.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 83 PLQTPGSVLSVSTPFVH 133
P+ +PGS L + FVH
Sbjct: 104 PMTSPGSGLILQANFVH 120
>BC008390-1|AAH08390.1| 219|Homo sapiens PDE4D protein protein.
Length = 219
Score = 28.3 bits (60), Expect(2) = 5.1
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 113 VSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMIGAYKD 271
+ TPF V+ L TVR + +T+L DR P+ I T+ G++ +
Sbjct: 158 IVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATITGSWME 210
Score = 21.0 bits (42), Expect(2) = 5.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 83 PLQTPGSVLSVSTPFVH 133
P+ +PGS L + FVH
Sbjct: 104 PMTSPGSGLILQANFVH 120
>BC013902-1|AAH13902.1| 486|Homo sapiens FAD-dependent
oxidoreductase domain containing 1 protein.
Length = 486
Score = 29.9 bits (64), Expect = 8.3
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 473 RRAIPHGAFAGLVASRPGQCGRADGYIL--EGKELEFYLRKIKS 598
RR +PHG GL+ RPG R G+ L +GK E +KIKS
Sbjct: 3 RRVLPHGMGRGLLTRRPGT--RRGGFSLDWDGKVSEI-KKKIKS 43
>AF103801-1|AAF02421.1| 486|Homo sapiens unknown protein.
Length = 486
Score = 29.9 bits (64), Expect = 8.3
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 473 RRAIPHGAFAGLVASRPGQCGRADGYIL--EGKELEFYLRKIKS 598
RR +PHG GL+ RPG R G+ L +GK E +KIKS
Sbjct: 3 RRVLPHGMGRGLLTRRPGT--RRGGFSLDWDGKVSEI-KKKIKS 43
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,605,280
Number of Sequences: 237096
Number of extensions: 1971960
Number of successful extensions: 4790
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4790
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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