Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40534
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   127   6e-30
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   126   1e-29
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   2.7  
At1g02350.1 68414.m00181 protoporphyrinogen oxidase-related cont...    28   4.7  
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    28   6.2  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  127 bits (307), Expect = 6e-30
 Identities = 58/86 (67%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTG 177
           RD  HKRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALRLDTG
Sbjct: 5   RDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTG 64

Query: 178 NFSWGSECSTRKTRIIDVVYNASNND 255
           N+SWGSE +TRKTR++DVVYNASNN+
Sbjct: 65  NYSWGSEATTRKTRVLDVVYNASNNE 90



 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 48/94 (51%), Positives = 59/94 (62%), Gaps = 10/94 (10%)
 Frame = +3

Query: 255 LVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT-----EAEEAII----NK 404
           LVRTKTLVK+AIV VDA PF+QWY SHY + LGR KK A  T     E EEA +      
Sbjct: 91  LVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEV 150

Query: 405 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLA 506
           K+S    RK  +RQ    ++  +E+QF +GRLLA
Sbjct: 151 KKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLA 184



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = +2

Query: 491 GAFAGLVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 610
           G     ++SRPGQCGRADGYILEGKELEFY++KI+ K+ K
Sbjct: 180 GRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  126 bits (305), Expect = 1e-29
 Identities = 60/86 (69%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTG 177
           RD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALRLDTG
Sbjct: 5   RDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTG 64

Query: 178 NFSWGSECSTRKTRIIDVVYNASNND 255
           NFSWGSE  TRKTRI+DV YNASNN+
Sbjct: 65  NFSWGSEAVTRKTRILDVAYNASNNE 90



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 42/84 (50%), Positives = 52/84 (61%)
 Frame = +3

Query: 255 LVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 434
           LVRT+TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE     K+S    RK 
Sbjct: 91  LVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNHVQRKL 146

Query: 435 LARQRLAKVEGALEEQFHTGRLLA 506
             RQ    ++  LEEQF +GRLLA
Sbjct: 147 EMRQEGRALDSHLEEQFSSGRLLA 170



 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = +2

Query: 491 GAFAGLVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 610
           G     +ASRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 166 GRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 255 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 383
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At1g02350.1 68414.m00181 protoporphyrinogen oxidase-related
           contains very low similarity to protoporphyrinogen
           oxidase [SP|P55826]
          Length = 140

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 435 LARQRLAKVEGALEEQFHTGRLLAWWRVAQVSVVAPMVTS*KAKNSSSI*ERSSLRGRSN 614
           L  +R +K+EG          L  +W V     + P+++  K  NS    ER+    R N
Sbjct: 39  LINRRSSKLEGGGALSLFASLLEEFWFVLWNGKLRPLLSKPKGPNSWFFQERNHNVARGN 98

Query: 615 MCNLK*TL-KIQK 650
           +C ++  L K++K
Sbjct: 99  LCKVELQLAKLRK 111


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 334 CDSYHCLNGVASTTTIAFLTRVFVRTNHC*MHYTQHQ*YGFCELNIPIP 188
           C  Y  L GV S+  +A L+ +  R     +H+     Y  C L +P P
Sbjct: 492 CFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAIYAVCRLMLPFP 540


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,859,778
Number of Sequences: 28952
Number of extensions: 276246
Number of successful extensions: 754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)