Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40532
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 142 4e-35
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 135 8e-33
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 88 2e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 70 4e-13
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 64 2e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 64 2e-11
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 64 2e-11
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 62 7e-11
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 62 9e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 6e-10
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 59 8e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 59 8e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 55 1e-08
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 54 2e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 52 7e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 52 9e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 52 9e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 51 2e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 49 7e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 47 3e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 46 6e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 44 2e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 39 7e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 35 0.011
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.57
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 2.3
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 3.0
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 27 4.0
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 4.0
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 27 4.0
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 27 4.0
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 5.3
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 5.3
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 26 5.3
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 7.0
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 7.0
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 26 7.0
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 7.0
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 9.3
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 142 bits (345), Expect = 4e-35
Identities = 65/83 (78%), Positives = 78/83 (93%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 438
RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 439 KCHACIGGTNVREDIRQLESGVH 507
+CHACIGGT VR+D+ L++GVH
Sbjct: 117 ECHACIGGTLVRDDMAALQAGVH 139
Score = 131 bits (317), Expect = 1e-31
Identities = 61/87 (70%), Positives = 75/87 (86%)
Frame = +3
Query: 510 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 689
VVGTPGRV+DMI RRAL + +++FVLDEADEMLSRGFKDQI+D+F++L QV+LLSA
Sbjct: 141 VVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSA 200
Query: 690 TMPDDVLEVSRCFMRDPVRILVQKESL 770
TMP DVLEV+ FMRDP+RILV+K+ L
Sbjct: 201 TMPQDVLEVTTKFMRDPIRILVKKDEL 227
Score = 82.2 bits (194), Expect = 8e-17
Identities = 34/50 (68%), Positives = 45/50 (90%)
Frame = +2
Query: 104 MDPGTLDTDWDQVVETFDDMNLKXELLRGIYAYGFEKPSAIQQRAIMPCI 253
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP +
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPIL 54
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 135 bits (326), Expect = 8e-33
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 435
GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N
Sbjct: 58 GRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMN 117
Query: 436 AKCHACIGGTNVREDIRQLESGVH 507
+CHACIGGT+V DI++L+ G H
Sbjct: 118 VQCHACIGGTSVGNDIKKLDYGQH 141
Score = 104 bits (250), Expect = 1e-23
Identities = 46/87 (52%), Positives = 67/87 (77%)
Frame = +3
Query: 510 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 689
V GTPGRV DMI RR L +K+ +LDEADE+L++GFK+QI+D+++ L QV+++SA
Sbjct: 143 VSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSA 202
Query: 690 TMPDDVLEVSRCFMRDPVRILVQKESL 770
T+P DVLE++ F +PVRILV+++ L
Sbjct: 203 TLPQDVLEMTNKFTTNPVRILVKRDEL 229
Score = 55.6 bits (128), Expect = 8e-09
Identities = 27/48 (56%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = +2
Query: 104 MDPGTLDTDWD-QVVETFDDMNLKXELLRGIYAYGFEKPSAIQQRAIM 244
M+ L T D V +F++MNLK +LLRGIYAYG+E PSA+Q RAI+
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAII 53
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 87.8 bits (208), Expect = 2e-18
Identities = 42/84 (50%), Positives = 56/84 (66%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 435
GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG H+N
Sbjct: 81 GRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMN 140
Query: 436 AKCHACIGGTNVREDIRQLESGVH 507
K GGT +R+DI +L VH
Sbjct: 141 VKVMVTTGGTTLRDDIIRLNDTVH 164
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/63 (39%), Positives = 34/63 (53%)
Frame = +3
Query: 510 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 689
VVGTPGRV D+ + + FV+DEAD++LS F I + + Q+ L SA
Sbjct: 166 VVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSA 225
Query: 690 TMP 698
T P
Sbjct: 226 TFP 228
Score = 41.9 bits (94), Expect = 1e-04
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +2
Query: 56 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKXELLRGIYAYGFEKPSA 223
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 224 IQQRAI 241
IQ+ +I
Sbjct: 70 IQEESI 75
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 69.7 bits (163), Expect = 4e-13
Identities = 31/64 (48%), Positives = 48/64 (75%)
Frame = +1
Query: 250 HPGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 429
+P R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G +
Sbjct: 151 NPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY 210
Query: 430 LNAK 441
K
Sbjct: 211 TEVK 214
Score = 64.9 bits (151), Expect = 1e-11
Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = +3
Query: 510 VVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLS 686
V+GTPG V D++ RR L A IK+FVLDEAD ML +G DQ + +L + Q++L S
Sbjct: 234 VIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFS 293
Query: 687 ATMPDDVLEVSRCFMRDPVRILVQKESL 770
AT + V + + F + I ++ E L
Sbjct: 294 ATFSERVEKYAERFAPNANEIRLKTEEL 321
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +2
Query: 143 VETFDDMNLKXELLRGIYAYGFEKPSAIQQRAI 241
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 64.5 bits (150), Expect = 2e-11
Identities = 31/87 (35%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +3
Query: 510 VVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLS 686
VV TPGR+ ++ + L N++K FVLDE D++L S + I +VF+ QV++ S
Sbjct: 177 VVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFS 236
Query: 687 ATMPDDVLEVSRCFMRDPVRILVQKES 767
AT+ +++ + + FM++P+ I V E+
Sbjct: 237 ATLSNEIRPICKKFMQNPLEIYVDDET 263
Score = 59.3 bits (137), Expect = 6e-10
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 432
G DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ +L
Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 433 NAKCHACIGGTNVREDI 483
+ + GG N+++D+
Sbjct: 148 DVRTAVFYGGINIKQDM 164
Score = 32.7 bits (71), Expect = 0.061
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +2
Query: 152 FDDMNLKXELLRGIYAYGFEKPSAIQQRAI 241
F D LK ELLR I GFE PS +QQ I
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCI 82
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +3
Query: 513 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 692
+ TPGR+ DM+ + + VLDEAD ML GF+ QI + + D Q ++ SAT
Sbjct: 250 IATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSAT 309
Query: 693 MPDDVLEVSRCFMRDPVRILV 755
P +V ++R ++ D +++ V
Sbjct: 310 WPKEVQRLARDYLNDYIQVTV 330
Score = 41.1 bits (92), Expect = 2e-04
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIAL 420
GRD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 159 GRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKF 218
Query: 421 GDHLNAKCHACIGGTNVREDIRQLESGV 504
G + GG IR L GV
Sbjct: 219 GKSSRIRNTCVYGGVPRGPQIRDLIRGV 246
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 143 VETFDDMNLKXELLRGIYAYGFEKPSAIQQRA 238
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 64.1 bits (149), Expect = 2e-11
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Frame = +3
Query: 504 SWVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-----MLSADV 668
S ++GTPGR+ D+I ++ + + VLDEAD ML GF+ I ++ +
Sbjct: 287 SVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSR 346
Query: 669 QVILLSATMPDDVLEVSRCFMRDPVRILVQKESL 770
Q + SAT P+ V ++ F++DPV+I + + L
Sbjct: 347 QTVFFSATWPESVRALAATFLKDPVKITIGSDEL 380
Score = 44.8 bits (101), Expect = 1e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGD 426
GRDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + + +L
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQ 261
Query: 427 HLNAKCHACIGGTNVREDIR 486
N K GG E R
Sbjct: 262 GTNLKAVVVYGGAPKSEQAR 281
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 62.5 bits (145), Expect = 7e-11
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +3
Query: 510 VVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 686
V+ TPGR D M + I++ V+DEAD ML GF D+++++ + Q +L S
Sbjct: 384 VIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFS 443
Query: 687 ATMPDDVLEVSRCFMRDPVRILVQKESLPWKV 782
ATM D V ++ R + PVR+ V + K+
Sbjct: 444 ATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKL 475
Score = 53.2 bits (122), Expect = 4e-08
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGD 426
G+D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V +
Sbjct: 296 GKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIAS 355
Query: 427 HLNAKCHACIGGTNVREDIRQL 492
+ CIGG +++ ++L
Sbjct: 356 FTDIMVCLCIGGLSLKLQEQEL 377
Score = 31.5 bits (68), Expect = 0.14
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 149 TFDDMNLKXELLRGIYAYGFEKPSAIQQRAI 241
+F MNL +L+G+ GFE P+ IQ + I
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 62.1 bits (144), Expect = 9e-11
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +3
Query: 501 CSWVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK---MLSADV- 668
C + TPGR+ D+I R + IK VLDEAD ML GF+ QI + + M S +
Sbjct: 306 CDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEER 365
Query: 669 QVILLSATMPDDVLEVSRCFMRDPVRILV 755
Q ++ SAT P D+ ++R F++D V + V
Sbjct: 366 QTLMFSATFPRDIQLLARDFLKDYVFLSV 394
Score = 40.3 bits (90), Expect = 3e-04
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LILAPTR 381
GRD++A AQ+G+GKTA F IL Q R +A LILAPTR
Sbjct: 206 GRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTR 265
Query: 382 ELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 501
EL QI + + A GG ++R IRQ++ G
Sbjct: 266 ELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQG 305
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 59.3 bits (137), Expect = 6e-10
Identities = 28/71 (39%), Positives = 46/71 (64%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 438
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 439 KCHACIGGTNV 471
+ +GG ++
Sbjct: 144 RSVVIVGGMDM 154
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 510 VVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 686
+V TPGR+ D + + +K ++DEAD +L F I + K++ + + +L S
Sbjct: 168 LVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFS 227
Query: 687 ATMPDDVLEVSRCFMRDPVRILVQKE 764
ATM V ++ R + PVR+ V +
Sbjct: 228 ATMTSKVEKLQRASLHQPVRVAVSSK 253
Score = 30.3 bits (65), Expect = 0.33
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = +2
Query: 8 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKXELLR 187
M+ S ++ +ED S N + S + D+ ++ +TF ++ + EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 188 GIYAYGFEKPSAIQQRAI 241
GF+ P+ IQQ AI
Sbjct: 60 ACEKLGFKTPTPIQQEAI 77
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 58.8 bits (136), Expect = 8e-10
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 435
GR+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + ALG +LN
Sbjct: 44 GRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLN 103
Query: 436 AKCHACIGGTN-VREDI 483
K +GG + +R+ I
Sbjct: 104 LKHALIVGGMDMIRQSI 120
Score = 48.8 bits (111), Expect = 9e-07
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Frame = +3
Query: 510 VVGTPGRVYDMITRRALHA----NTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADVQ 671
VV TPGR+ D+I IK V+DEAD +LS F D + D F +L S D Q
Sbjct: 129 VVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQ 188
Query: 672 VILLSATMPDDVLEV 716
+L +AT+ D + ++
Sbjct: 189 TLLFTATVTDAIRQL 203
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 58.8 bits (136), Expect = 8e-10
Identities = 28/86 (32%), Positives = 47/86 (54%)
Frame = +3
Query: 510 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 689
VV TPGR + L ++I+ V DEAD + GF Q+ ++ L Q +L SA
Sbjct: 193 VVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSA 252
Query: 690 TMPDDVLEVSRCFMRDPVRILVQKES 767
T+P +++ ++ ++DPV + + ES
Sbjct: 253 TLPRTLVDFAKAGLQDPVLVRLDVES 278
Score = 56.4 bits (130), Expect = 4e-09
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRELAQQIQKVVIALGDH 429
GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 106 GRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKG 165
Query: 430 LNAKCHACIGGTNVREDIRQL 492
+ + A +GG ++ E L
Sbjct: 166 TDLRSVAIVGGVSLEEQFSLL 186
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 152 FDDMNLKXELLRGIYAYGFEKPSAIQQRAI 241
F M L LLR I+ GF+ P+ IQ++ I
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 54.8 bits (126), Expect = 1e-08
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVVIA 417
G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+
Sbjct: 51 GKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL-- 108
Query: 418 LGDHLNAKCHACIGGTNV 471
+ L A C I NV
Sbjct: 109 --EKLTAFCSKHIRFINV 124
Score = 49.2 bits (112), Expect = 7e-07
Identities = 25/91 (27%), Positives = 46/91 (50%)
Frame = +3
Query: 510 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 689
V+ TP R + L + +K V+DEAD MLS G+ + + + + L Q L+SA
Sbjct: 144 VIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSA 203
Query: 690 TMPDDVLEVSRCFMRDPVRILVQKESLPWKV 782
T+ ++ + + R+P + V+ + K+
Sbjct: 204 TLSKNIASLQKLVCRNPFILAVKDKEASGKL 234
Score = 32.7 bits (71), Expect = 0.061
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 146 ETFDDMNLKXELLRGIYAYGFEKPSAIQQRAI 241
+TF D NL L R I+ FEKP+++Q I
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 54.4 bits (125), Expect = 2e-08
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Frame = +3
Query: 510 VVGTPGRVYDMITR---RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 680
VV TPGR+ D+++ R + + VLDEAD M GF+ Q+ + + D Q +L
Sbjct: 545 VVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVL 604
Query: 681 LSATMPDDVLEVSRCFMRDPVRILVQKESL 770
SAT P + ++R ++ PV I V S+
Sbjct: 605 FSATFPRAMEALARKVLKKPVEITVGGRSV 634
Score = 47.2 bits (107), Expect = 3e-06
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Frame = +1
Query: 244 ALHPGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKV 408
A+ GRDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI +
Sbjct: 451 AITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRE 510
Query: 409 VIALGDHLNAKCHACIGGTNVREDIRQLESG 501
LN + GG +++ I L+ G
Sbjct: 511 CKPFLKLLNIRACCAYGGAPIKDQIADLKRG 541
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 128 DWDQVVETFDDMNLKXELLRGIYAYGFEKPSAIQQRAI 241
D + V ++ L + + I + G+EKP++IQ +AI
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI 449
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.4 bits (120), Expect = 7e-08
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIALG 423
GRD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++ +G
Sbjct: 76 GRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIG 135
Query: 424 DHLNAKCHACIGGTNVREDIRQL 492
+ IGG N +E+ +L
Sbjct: 136 RLHSFSAGLIIGGNNYKEEKERL 158
Score = 45.2 bits (102), Expect = 1e-05
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 510 VVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 686
+V TPGR+ I + + +++ +LDEAD +L GF+ + + L Q +L S
Sbjct: 164 LVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFS 223
Query: 687 ATMPDDVLEVSRCFMRDPVRILVQK 761
AT V +++R +++P I V +
Sbjct: 224 ATQTKSVKDLARLSLQNPDFISVHE 248
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 52.0 bits (119), Expect = 9e-08
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDH 429
G D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI + +
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPS 218
Query: 430 LNAKCHACIGGTNVREDIRQLESGVH 507
N + + GG V++ R L H
Sbjct: 219 PNIRVMSITGGLAVQKQQRLLNKHPH 244
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = +3
Query: 510 VVGTPGRVYDMITRRALHAN--TIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----Q 671
VV TPGR++ +I L N IK VLDEAD +L + +++ + ++L + Q
Sbjct: 246 VVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQ 305
Query: 672 VILLSATMPD 701
+ SAT +
Sbjct: 306 TFIFSATFDE 315
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 52.0 bits (119), Expect = 9e-08
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVVI 414
+D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN 346
Query: 415 ALGDHLNAKCHACIGGTNVREDIRQLESGVH 507
+ L +C + +GG E Q+ G H
Sbjct: 347 KFAEPLGFRCVSVVGGHAFEEQSFQMSQGAH 377
Score = 47.6 bits (108), Expect = 2e-06
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 19/101 (18%)
Frame = +3
Query: 510 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML----------- 656
VV TPGR+ D + RR + V+DEAD ML GF+D ++ + L
Sbjct: 379 VVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGS 438
Query: 657 --------SADVQVILLSATMPDDVLEVSRCFMRDPVRILV 755
S+ Q I+ SAT+P V +++ ++ +PV + +
Sbjct: 439 ILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTI 479
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 51.2 bits (117), Expect = 2e-07
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +3
Query: 513 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI-HDVFKMLSADVQVILLSA 689
+GTP R+ I + L ++ FV+DEAD + GF +Q H + S+++ L SA
Sbjct: 171 IGTPMRLVQAI-QTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSA 229
Query: 690 TMPDDVLEVSRCFMRDPVRILV 755
T+P V E+++ DP+RI+V
Sbjct: 230 TIPSRVEELAKVVTVDPIRIIV 251
Score = 42.3 bits (95), Expect = 8e-05
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQK 405
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 49.2 bits (112), Expect = 7e-07
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +3
Query: 504 SWVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 683
S V+GTPGR+ +M++ + + +++ +LDEAD ++ GF+ + + L + L
Sbjct: 134 SVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLF 191
Query: 684 SATMPDDVLEVSR-CFMRDPVRILV 755
SATM D V + +R+ VR+ V
Sbjct: 192 SATMNDTVSSFLKIAGLRNSVRVSV 216
Score = 39.1 bits (87), Expect = 7e-04
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKV 408
+D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +3
Query: 510 VVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML-SADVQVILL 683
+V TPGR+ D + + ++ V+DEAD +L GF+D++ + K+L S + Q +L
Sbjct: 215 LVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLF 274
Query: 684 SATMPDDVLEVSRCFMR 734
SAT V +++R ++
Sbjct: 275 SATQTTKVEDLARISLK 291
Score = 46.0 bits (104), Expect = 6e-06
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALG 423
GRDV+ A++G+GKT F +I +L + R +I++PTRELA QI V L
Sbjct: 126 GRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELL 185
Query: 424 DHLNAKCHACIGGTNVREDIRQLESGVH 507
+ + IGG N R + +L GV+
Sbjct: 186 KYHHQTFGIVIGGANRRAEADKLVKGVN 213
Score = 30.7 bits (66), Expect = 0.25
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 143 VETFDDMNLKXELLRGIYAYGFEKPSAIQQRAIMPCI 253
+E F D+ L + + I GFE + IQ+R+I P +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLL 124
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 46.0 bits (104), Expect = 6e-06
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Frame = +1
Query: 220 CNPATRNNALHPGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPT 378
C PA N +D +AQ+G+GKT + + I+Q++ T A+I+APT
Sbjct: 169 CLPALLNT---DDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225
Query: 379 RELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLESGVH 507
REL QQI V L + H C+ IGG + + ++ GV+
Sbjct: 226 RELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVN 271
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +3
Query: 510 VVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 686
++GTPGR+ D + AL + ++ VLDE D ++ GF++ + + L + +I
Sbjct: 273 LIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKD 332
Query: 687 ATMPD-DVLEVSRCFMRDPVRIL 752
++P V + M+D V+ L
Sbjct: 333 LSIPSRKVTMLCSATMKDTVKRL 355
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +3
Query: 510 VVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-MLSADVQVILL 683
++ TPGR+ D + R L + + F+LDEAD ++ GF + I ++ + + + + +
Sbjct: 167 LIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCF 226
Query: 684 SATMPDDVLEVSR 722
SATMP V V R
Sbjct: 227 SATMPPKVSNVFR 239
Score = 35.5 bits (78), Expect = 0.009
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Frame = +1
Query: 241 NALHPGRD-VIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQ 402
N + P + + QA++GTGKT F + + + + + ++IL+PTRELA QI
Sbjct: 70 NEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIF 129
Query: 403 KVVIALGDHLNAKCHACIGG-TNVRED 480
+ L + IGG + +RE+
Sbjct: 130 EEARKLTYGTGIRVSYAIGGNSKMREE 156
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.1 bits (87), Expect = 7e-04
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 256 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHL 432
G DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGA 232
Query: 433 NAKCHACIGGTNVREDIRQL 492
+ A G ++R + QL
Sbjct: 233 GLQVCAWTGQKSLRHETYQL 252
Score = 35.1 bits (77), Expect = 0.011
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 510 VVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS 659
+V TPGR+ D I + ++ V+DEAD +L + F+D + V +S
Sbjct: 264 LVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEIS 314
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 35.1 bits (77), Expect = 0.011
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +1
Query: 211 KTFCNPATRNNALHPGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA 390
KT+ + A N L G VI + +GK+ + I ILQ + + A + PT+ LA
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369
Query: 391 QQIQKVVI 414
Q +K +I
Sbjct: 370 QDQKKSLI 377
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.5 bits (63), Expect = 0.57
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 119 LDTDWDQVVETFDDMNLKXELLRGIYAYGFEKPSAIQQRAIMPCIQD 259
LDT+W V + NL+ + + I + F PS I + MP + D
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLND 230
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 286 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 402
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 318 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 419
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 116 TLDTDWDQVVETFDDMNLKXELLRGIYAYGF 208
T D WD E FDD N +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 93 DLREWTLGHLTPT 131
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 528 DLECPPPMNTTLQLANIFTDIGATNASMAFSIQVITKS 415
D+E PP LQ+AN+ GA + + + ++ ++
Sbjct: 103 DMESPPVQGIRLQMANLLASAGALHKAWSMYWDILERT 140
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 528 RVYDMITRRALHANTIKLFVLDEADEM 608
++ + + R + A+T K+ +LDEAD M
Sbjct: 106 QIKNFASTRQIFASTFKMIILDEADAM 132
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 600 DEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 710
+EMLS +H V+ S + + LS+T P+ +L
Sbjct: 299 EEMLSPSSLYTLHQVYTATSESINIKTLSSTTPEYIL 335
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 432 QVITKSYHHLLNLLGQLSCGSQDQ 361
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 437 LNAMLALVAPMSVKIFANWRVVFMG 511
L AML L + ++ W VVFMG
Sbjct: 122 LQAMLILTIKLGIRRHVEWPVVFMG 146
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 397 IQKVVIALGDHLNAKCHACIGGTNVRED 480
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 492 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 391
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 243 CLASRTRCYRSSPVRNWKNCYFLYIDSTTNRYK 341
C R CYR+S + +K + + S N Y+
Sbjct: 5 CTLRRLECYRASRLMPYKPSFLFSLISNVNEYE 37
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 113 QGPFPEVHRNYLDPSMAHFWNPLANL 36
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 638 MDLVLETSGQHFISFIKNKKFDGVGMKRTTSYHI 537
+D V E HF F+KN+ D + +R H+
Sbjct: 476 LDAVYERECNHFKKFVKNELKDSLESQRVDLRHL 509
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,506,319
Number of Sequences: 5004
Number of extensions: 77115
Number of successful extensions: 324
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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