Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40531
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 146 3e-36
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 146 3e-36
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 146 3e-36
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 38 0.001
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 32 0.10
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 31 0.23
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 29 0.71
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 27 2.2
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 5.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 6.6
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 6.6
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 6.6
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 25 8.7
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 146 bits (354), Expect = 3e-36
Identities = 62/81 (76%), Positives = 74/81 (91%)
Frame = +3
Query: 507 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRXVAMNPVEHPHGGGNHQHIGKA 686
+G+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP R VAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221
Query: 687 STVKRGTSAGRKVGLIAARRT 749
+TV R ++ G+KVGLIAARRT
Sbjct: 222 TTVPRQSAPGQKVGLIAARRT 242
Score = 130 bits (313), Expect = 3e-31
Identities = 57/82 (69%), Positives = 67/82 (81%)
Frame = +1
Query: 259 EAYYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGH 438
E YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH
Sbjct: 79 EGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGH 138
Query: 439 NPDAKRTRVKLPSGAKKVLPSS 504
+ D +TRVKLPSGAKKV+PSS
Sbjct: 139 DVDTGKTRVKLPSGAKKVVPSS 160
Score = 113 bits (272), Expect = 3e-26
Identities = 52/77 (67%), Positives = 65/77 (84%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 203 VHFRDPYKFKTRKELFI 253
V FR+PY ++T E F+
Sbjct: 60 VAFRNPYHYRTDVETFV 76
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 146 bits (354), Expect = 3e-36
Identities = 62/81 (76%), Positives = 74/81 (91%)
Frame = +3
Query: 507 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRXVAMNPVEHPHGGGNHQHIGKA 686
+G+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP R VAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221
Query: 687 STVKRGTSAGRKVGLIAARRT 749
+TV R ++ G+KVGLIAARRT
Sbjct: 222 TTVPRQSAPGQKVGLIAARRT 242
Score = 130 bits (313), Expect = 3e-31
Identities = 57/82 (69%), Positives = 67/82 (81%)
Frame = +1
Query: 259 EAYYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGH 438
E YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH
Sbjct: 79 EGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGH 138
Query: 439 NPDAKRTRVKLPSGAKKVLPSS 504
+ D +TRVKLPSGAKKV+PSS
Sbjct: 139 DVDTGKTRVKLPSGAKKVVPSS 160
Score = 113 bits (272), Expect = 3e-26
Identities = 52/77 (67%), Positives = 65/77 (84%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 203 VHFRDPYKFKTRKELFI 253
V FR+PY ++T E F+
Sbjct: 60 VAFRNPYHYRTDVETFV 76
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 146 bits (354), Expect = 3e-36
Identities = 62/81 (76%), Positives = 74/81 (91%)
Frame = +3
Query: 507 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRXVAMNPVEHPHGGGNHQHIGKA 686
+G+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP R VAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221
Query: 687 STVKRGTSAGRKVGLIAARRT 749
+TV R ++ G+KVGLIAARRT
Sbjct: 222 TTVPRQSAPGQKVGLIAARRT 242
Score = 130 bits (313), Expect = 3e-31
Identities = 57/82 (69%), Positives = 67/82 (81%)
Frame = +1
Query: 259 EAYYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGH 438
E YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH
Sbjct: 79 EGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGH 138
Query: 439 NPDAKRTRVKLPSGAKKVLPSS 504
+ D +TRVKLPSGAKKV+PSS
Sbjct: 139 DVDTGKTRVKLPSGAKKVVPSS 160
Score = 113 bits (272), Expect = 3e-26
Identities = 52/77 (67%), Positives = 65/77 (84%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 203 VHFRDPYKFKTRKELFI 253
V FR+PY ++T E F+
Sbjct: 60 VAFRNPYHYRTDVETFV 76
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 609 PYVRXVAMNPVEHPHGGGNHQHIG 680
P VR AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 31.9 bits (69), Expect = 0.10
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 554 RFVNTSTSSNNT-DHALLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 414
RF+N +T+S++T LLLD + S +V +ASG+ P+ KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 30.7 bits (66), Expect = 0.23
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = -3
Query: 402 CQTTSITHFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACVVGFGTMKSSFL 235
C T FL+ H ++ +++H + +S FL+T+N LA VGF M SFL
Sbjct: 190 CNGVGFTMFLY---HK---KYLTDKHFVGQNRSTFLATLNILAQTVGF--MAGSFL 237
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 29.1 bits (62), Expect = 0.71
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -1
Query: 566 SFQNRFVNTSTSSNNTDHALLLDGRTFLAPDGSFTLV----RLASGLCPITVAKFPEARA 399
SF+ + NT+T N + + LDGR +P G V L + L + + P
Sbjct: 37 SFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSV 96
Query: 398 RRPLSPIFS 372
R+ PI S
Sbjct: 97 RQHNLPITS 105
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 568 PAFKIGLSIRPPPATIPTMPCCLMAEPSWLQTVALLLYA 452
P K+GL+ PP + M W + VAL+L++
Sbjct: 255 PTTKVGLNDWVPPTVLYLMSLFFSTSGGWTEKVALILWS 293
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.2 bits (55), Expect = 5.0
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -2
Query: 271 CSRLRDNEELLPCLE 227
C RL+D ++L+PC+E
Sbjct: 607 CKRLQDMDKLIPCIE 621
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -2
Query: 619 RTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPCCLMAEPSWLQTVA 467
R Y LR Y+ P F+ S P PA + + + +W Q +A
Sbjct: 1211 RVYSHNLRNITYILLEAPVFRKQTSAEPYPARMDDLSSAIFYS-AWNQCIA 1260
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 392 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 294
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 6.6
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Frame = -1
Query: 749 GPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLY-RVHG-NTTYIWPAVTFDLVLVV 576
G ASS+ + A SS +GSL Y T V ++ R G ++T + + F
Sbjct: 439 GSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSIFSTATEA 498
Query: 575 CPSSFQ-NRFVNTSTSSNNTDHALLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEA 405
+S Q + + S+S++N + + + G+ + L+S ++ + P A
Sbjct: 499 TDTSVQTSSAIYDSSSTSNIQSS----SSVYASSTGALSSNSLSSSTSSVSTSYIPNA 552
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 543 IDKPILKAGRAYHKYKVKRNCWPYVRXVAMN 635
++KPI K+K K +CW +R N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,654
Number of Sequences: 5004
Number of extensions: 69517
Number of successful extensions: 222
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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