Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40526
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    36   0.006
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    34   0.018
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    31   0.17 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.51 
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    28   1.2  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.1  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.8  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   6.3  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   8.4  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   8.4  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = +2

Query: 266 QIQRLDLSQNKIDRLGDRLFEGLIRLETLNLAGNMLAELPDSIFERNRLHMLENINLSGN 445
           +I RL L  N I  +G  + +   RL  LN+  N+L E P+S+    RL  LE +++S N
Sbjct: 53  RIARLALGHNFIKSIGPEILK-FTRLRYLNIRSNVLREFPESLC---RLESLEILDISRN 108

Query: 446 LFEHPP 463
             +  P
Sbjct: 109 KIKQLP 114



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 508 LSHNKIVDIPAEDSVLVNIKKLDLSFNPL 594
           +S NKI  +P     L+N+K L +S N L
Sbjct: 105 ISRNKIKQLPESFGALMNLKVLSISKNRL 133


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +1

Query: 511 SHNKIVDIPAEDSVLVNIKKLDLSFNPLSQKSIDSVLNEPKTVRELNLAGTGIQTLGQL- 687
           SHN +  I ++   LV +K L L FN LS + +   +   K +  ++L+   I  +  L 
Sbjct: 556 SHNLLSQISSKIGSLVKLKHLYLQFNDLSNR-LPQEIGLLKNLETIDLSYNAITNIASLS 614

Query: 688 ETPFLCSLNLSFN 726
           E P L S+N++ N
Sbjct: 615 ECPKLNSINVACN 627



 Score = 33.9 bits (74), Expect = 0.024
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
 Frame = +2

Query: 8    QLSYLFPSAFKIHPRLREIKLANNKFNFFPSELISTLQYLELVDLSGNALKKCR*A*FCS 187
            ++SY+ P+  K+   L  + L  N    FP E +  +  L++V+LS N L+K +     +
Sbjct: 717  EMSYVSPNLGKLK-HLVHLDLHANNIKIFPEE-VWQVSSLKVVNLSSNILEKIKLP-VAT 773

Query: 188  PSKTEDNFTSKK*IGNS*RNGFHN-SSQ------IQRLDLSQNKIDRLGDRLFEGLIRLE 346
              K     +  K +     N   + SSQ      ++ L L  N++        E    L+
Sbjct: 774  SKKLTRTISQLKIMRTLSGNPVSSLSSQEFVMPTVEELYLVDNRLGNDCFTALEYFKCLK 833

Query: 347  TLNLAGNMLAELPDSIFERNRLHMLENINLSGN 445
             LNL+ N L E+P   F+      L+++ +SGN
Sbjct: 834  VLNLSYNYLTEIPSKFFQ--NFSDLKHLFVSGN 864



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/57 (26%), Positives = 33/57 (57%)
 Frame = +2

Query: 278 LDLSQNKIDRLGDRLFEGLIRLETLNLAGNMLAELPDSIFERNRLHMLENINLSGNL 448
           LD+S++ ++ +  +++     L +LN++ N+  +LP    E  R   L+ +++S NL
Sbjct: 410 LDISRSNLEVIPVKIYPYAHELISLNVSHNLSLDLPLDFME--RCVKLKRLDISNNL 464



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 508 LSHNKIVDIPAEDSVLVNIKKLDLSFN 588
           +++NK+  +P     LVN+  LDLS+N
Sbjct: 509 IANNKLFFLPHSTRYLVNLTYLDLSYN 535



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 8/153 (5%)
 Frame = +2

Query: 2    DNQLSYLFPSAFKIHPRLREIKLANNKFNFFPSELISTLQYLELVDLSGNALKKCR*A*F 181
            DN+L     +A +    L+ + L+ N     PS+       L+ + +SGN L     +  
Sbjct: 815  DNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELANLSIS-S 873

Query: 182  CSPSKTEDNFTSKK*IGNS*RNGFHNSSQIQRLDLSQNKIDRLG-----DRLFEGLIRLE 346
             +    E  + +   + +  +N   + S ++ LD+S N +  L       +    L +LE
Sbjct: 874  TAQVLLETLYANGNRLSSFPKNEALSKS-LRFLDISTNNLQNLAVEKAEKKSLTKLPQLE 932

Query: 347  TLNLAGN---MLAELPDSIFERNRLHMLENINL 436
             LNL+GN     +E  D+ F ++ L  L+ +++
Sbjct: 933  YLNLSGNTWFRFSEHEDTNFTKSYLKNLKFLSI 965



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 53  LREIKLANNKFNFFP--SELISTLQYLEL 133
           L+E+ +ANNK  F P  +  +  L YL+L
Sbjct: 504 LKELNIANNKLFFLPHSTRYLVNLTYLDL 532


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +2

Query: 263 SQIQRLDLSQNKIDRLGDRLFEGLIRLETLNLAGNMLAELPDSIFERNRLHMLENINLSG 442
           SQ+  L  S  K+  +   +F  L  L +L+L+GN L E+P ++ E   L  L ++NL+ 
Sbjct: 332 SQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGE---LPQLCSLNLAS 388

Query: 443 N 445
           N
Sbjct: 389 N 389


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 533  MSTILLCDNLQ-QKQRSIASVKLSGVDVRTNFHLDLYFRAYVNDSFQKYYQVVQ 375
            M   ++ DN+  QK+ SI  +K    D + +  +DL  + Y+++    YY VV+
Sbjct: 4641 MIVFVILDNVNTQKKSSILDIKKVYYDTKEDGTMDLKIQPYIDEFAFDYYLVVR 4694


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 26  PSAFKIHPRLREIKLANNKFNFFPSELISTLQYLELVDLSGNALK 160
           P    +   LRE+ L +N  +  P+EL  TL  L+++ + GN L+
Sbjct: 220 PPELGLLTELREVLLFDNMISVIPAEL-GTLFQLKILGIEGNPLQ 263


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/45 (24%), Positives = 27/45 (60%)
 Frame = +1

Query: 505 RLSHNKIVDIPAEDSVLVNIKKLDLSFNPLSQKSIDSVLNEPKTV 639
           R+SH ++V    +DS L+N++ +  +    + +S D++ + P+ +
Sbjct: 90  RISHPQLVSANGDDSSLINVEGISSTDWQFTLESDDTIEHSPQCI 134


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +2

Query: 359 AGNMLAELPDSIFERNRLHMLENINLSGNLFEHPPLKALQKQYFFVSAVDCHT 517
           +G + A + + +F  NR +  + ++L   L  H P K         S  D HT
Sbjct: 3   SGKVRAFIDEELFHSNRNNSSDGLSLDTPLAIHTPAKGFDADLSPQSLYDLHT 55


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 50  RLREIKLANNKFNFFPSELISTLQYL 127
           RL+EI  +++K NF P ELI     L
Sbjct: 425 RLQEITHSDSKTNFIPKELIEARSQL 450


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 487 LLCFCCRLSHNKIVDIPAEDSVLVNIKKLDLSFNPLSQKSIDSVLNE 627
           +L   C+LS N I  +P  D V  ++    LSF+P ++K   ++LN+
Sbjct: 607 VLIVLCQLSQNFI--LPNVD-VARHVLLFILSFSPFNRKKSKTILND 650


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 505 RLSHNKIVDIPAEDSVLVNIKKLDLSFNPLSQKSIDS--VLNEP 630
           R+S ++++       +LVN+K L +S NPL   ++    + N P
Sbjct: 211 RISDDEVLLSKDSQGLLVNLKSLQVSRNPLRWPTVPQAVIYNSP 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,212
Number of Sequences: 5004
Number of extensions: 58826
Number of successful extensions: 197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)