Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40524
         (679 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   1.2  
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    34   3.7  
UniRef50_Q6FM53 Cluster: Similar to sp|Q04322 Saccharomyces cere...    33   4.8  
UniRef50_O77393 Cluster: Putative uncharacterized protein MAL3P6...    33   6.4  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = -1

Query: 334 WYVPARTHKRSYHQ 293
           WY+PARTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = -1

Query: 508 ELTAHLVLTGYWSP 467
           ELTAHLVL+GYWSP
Sbjct: 162 ELTAHLVLSGYWSP 175



 Score = 33.5 bits (73), Expect = 4.8
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -3

Query: 557 FSINRYFLLFYCLNGWRAHSPPGINWLLEPIDIYNVNAPPTLRYKF 420
           F ++R+ LL + ++   AH      W   P  +Y+VNAPPT RYKF
Sbjct: 149 FCLSRFLLLRW-VDELTAHLVLSGYW--SPRHLYDVNAPPTSRYKF 191


>UniRef50_Q6FM53 Cluster: Similar to sp|Q04322 Saccharomyces
           cerevisiae YMR192w; n=1; Candida glabrata|Rep: Similar
           to sp|Q04322 Saccharomyces cerevisiae YMR192w - Candida
           glabrata (Yeast) (Torulopsis glabrata)
          Length = 599

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -3

Query: 350 ETGRAVVRTCSDSQEVLPPVSSTNTTIVVSNCYLYKYK*KKIRSLL----PDPSMRRYAQ 183
           +TG+A V   SD++  LPP +      VV N     Y  K+IR L+    PD     Y  
Sbjct: 96  DTGKATVEANSDAEPTLPPRNIEEQRNVVVNTDFLAYNNKRIRDLVAREGPDREEEIYVN 155

Query: 182 IKT 174
           I T
Sbjct: 156 IGT 158


>UniRef50_O77393 Cluster: Putative uncharacterized protein MAL3P6.2;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL3P6.2 - Plasmodium falciparum
            (isolate 3D7)
          Length = 2423

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 159  CIYVLRFYLCISSHRRIWQKRSYXXXXXXXXXXXXNYYCSV 281
            CIY+ +  +CI+S   IW K+              NY+CS+
Sbjct: 966  CIYISKDIICINSELAIWLKKKNRNKLCLYFKPLQNYFCSM 1006


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,026,745
Number of Sequences: 1657284
Number of extensions: 12226642
Number of successful extensions: 24714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24713
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)