Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40524
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0233 + 32530174-32530492,32531081-32531127,32531277-325314...    28   7.9  

>03_06_0233 +
           32530174-32530492,32531081-32531127,32531277-32531413,
           32531673-32531841,32532598-32532885,32533021-32533107,
           32533454-32534152,32534244-32534735
          Length = 745

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 555 FDKPIFFIILLLKWVESSQPT 493
           F + +FFI++ LKWVE  + T
Sbjct: 155 FTRKVFFILIFLKWVEFDRLT 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,515,613
Number of Sequences: 37544
Number of extensions: 341344
Number of successful extensions: 624
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)