Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40524
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.2  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -3

Query: 632 SIALHSVHGKEVNSESSFNQCDMPHFSINRYFLLFYCLNGWRAHSPPGINWLLEPIDIYN 453
           S++  ++H     + +++N  +  + + N Y  L+Y +N +    P  +     P+ IY 
Sbjct: 84  SLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNIN-YIEQIPVPV-----PVPIYC 137

Query: 452 VNAPP 438
            N PP
Sbjct: 138 GNFPP 142


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 353 AETGRAVVRTCSDSQEVLP-PVSSTNTTIVVSNC 255
           A + R +    + S    P P SST  T+V+S C
Sbjct: 824 ASSPRYLSAAATSSTSTSPRPASSTAATLVLSGC 857


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 356 TAETGRAVVRTCSDSQEVLPPVSSTNTTIVVSNC 255
           T    R + RT S + E L  +    TTI  +NC
Sbjct: 266 TNTDARHLFRTASSTPEDLQDLEEPLTTIQHNNC 299


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 159 KLTSDVFIKTAIKRDDGFSQIKR*VVHRWYSDT*KLYVHQIVQQT 25
           KL++D      + +  G   IKR   H W  D+ K+  H+ V +T
Sbjct: 682 KLSTDPNTHFQVNQSHG---IKRSGSHSWEGDSFKVSKHEEVSRT 723


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 320  SDSQEVLPPVSSTNTTIVVSN 258
            S  + +LPP+S   TT V  N
Sbjct: 1847 SSLRTLLPPISVAETTFVGGN 1867


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 320  SDSQEVLPPVSSTNTTIVVSN 258
            S  + +LPP+S   TT V  N
Sbjct: 1843 SSLRTLLPPISVAETTFVGGN 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,975
Number of Sequences: 438
Number of extensions: 3908
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)