Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40523
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    31   0.18 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   2.3  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   3.9  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    26   5.2  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    25   6.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   6.9  
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    25   6.9  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   9.1  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   9.1  

>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
 Frame = +3

Query: 177 WWDRILFCDKFCNDSL-YD-TTQHILEYI--FFSGF--DEKNYLKILWVIISHFFVSFLS 338
           W D IL+ ++   ++L +D T +H   Y+  F   F  D+KN  K+ W  I+    S   
Sbjct: 136 WRDVILYTEEVLLEALCFDFTVEHPYPYVLSFIKKFVADDKNVTKVAWTYINDSTRSIAC 195

Query: 339 LLNSRELYAAS 371
           LL S +  AA+
Sbjct: 196 LLYSPKTIAAA 206


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 203 VTKKYSVPP-LRPNVPGPIESANTLTSANAPLIVPNPRPDT*AISSLLLPIS 51
           VT + ++PP   P  P P  +ANT  +  A  I P P       ++ + P+S
Sbjct: 204 VTPQSTLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLS 255


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 251 LQNVLSSIIQRVIAELVTKKYSVPPLRPN-VPGPIESANTLTSANAPLIVPNP 96
           L  VL S +   +A L+ K  SVP   P+ VP  I S N       P + PNP
Sbjct: 333 LPKVLPSSMLSSVAPLMQKSKSVPTSIPSVVPANISSPNP-----NPTLAPNP 380


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 199 VTSSAMTLCMILLNTFWSIY 258
           +T+S M LCM L    WS+Y
Sbjct: 122 ITASQMVLCMKLTAFAWSVY 141


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -3

Query: 248 QNVLSSIIQRVIAELVTKKYSVPPLRPNVPGPIESANTLTSANAPLIVPNPRPDT 84
           ++ L S+ +  + +LV K  S+P  R +    ++   T+T       +P P+P+T
Sbjct: 37  ESFLFSLSRDNVQQLVNKMISLPKERTSDGVLLQLPETVTPLPRAKPLPKPKPET 91


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 258 FFSGFDEKNYLKILWVIISHFFVSFLSLLNSRELYAASILPSYIGLMIT 404
           +F+ +D+  Y  +  +  S  F++      +   +  SILPSYI L I+
Sbjct: 502 WFASYDKGIYNLLFGMASSESFINGQIAEKNSFQFPCSILPSYIDLFIS 550


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 506 TTYWVKFNNNL*PCRETLYK 447
           T+ WVKF+ +L P R +L K
Sbjct: 12  TSMWVKFHESLNPIRSSLIK 31


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +2

Query: 284 LPKNSLGYHITFLCVI----SKFIEQQGTLCSFNPAFVHWS 394
           LP+     + T LC +    S F+++Q  + S +PA  HW+
Sbjct: 408 LPETCNHAYNTMLCKLTEDTSSFLKRQTEMLSHSPASSHWA 448


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 209 ELVTKKYSVPPLRPNVPGPIESAN 138
           +L++KK   PP +PNV   ++ +N
Sbjct: 569 DLLSKKKVQPPFKPNVQNDLDVSN 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,199
Number of Sequences: 5004
Number of extensions: 58826
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)