Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40523
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           28   1.3  
05_04_0340 - 20404703-20404771,20404908-20405093,20405191-204052...    30   1.8  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    29   4.1  
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534...    28   7.1  
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011...    28   7.1  
04_04_0236 + 23825368-23825763,23826229-23828667                       28   7.1  
02_01_0127 - 926333-926359,926637-926708,926928-927032,927129-92...    27   9.4  

>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 28.3 bits (60), Expect(2) = 1.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 165 IRPEWWDRILFCDKFCNDS 221
           +R  WW   +FC  FC  S
Sbjct: 246 VRGNWWTSCIFCKSFCRSS 264



 Score = 20.6 bits (41), Expect(2) = 1.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 69  ARDGLCVWPRIRNNEWSIC 125
           A D   V+ R+R N W+ C
Sbjct: 236 AGDDYEVYHRVRGNWWTSC 254


>05_04_0340 -
           20404703-20404771,20404908-20405093,20405191-20405292,
           20405400-20405464,20405551-20405631,20405983-20406055,
           20406147-20406248,20406437-20406556,20406690-20406800,
           20406889-20406960,20407228-20407341,20407423-20407521,
           20408472-20408849
          Length = 523

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 79  AYVSGLGFGTMSGAFALVNVLADSIGPGTLGLSGGTEYFFVTSSAMTLCMILLNTFWSIY 258
           AY  G   G ++     V  +AD +G G   L        VTS A   C  LL+++  + 
Sbjct: 275 AYAKGENIGDVTAKGESVGNIADLLGTGLSILISKRNPSLVTSFAFLSCGYLLSSYHEVR 334

Query: 259 SLVV 270
           S+V+
Sbjct: 335 SVVL 338


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 188 SVPPLRPNVPGPIESANTLTSANAPLIVPNPRP 90
           S+PPL P  P P + AN   +   PL  P P P
Sbjct: 225 SLPPLPPPPPPPPKPANIAGAPGLPLPPPPPPP 257


>09_04_0741 -
           19852339-19852497,19853185-19853246,19853352-19853415,
           19853561-19853614,19853744-19853890,19854460-19854564,
           19854651-19854794,19854987-19855093,19855613-19855712,
           19855804-19855833,19856492-19856608,19856705-19856828,
           19857143-19857189,19857272-19857400,19857777-19857852,
           19858446-19858543,19858630-19858671,19858811-19859044
          Length = 612

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 123 CTS*CIS*LDWPWHIRPEWWDRILFCDKFCNDSLYDTTQHILEYIFFSGFD 275
           C S C S +  P+    EW   +L  DK   D +++T Q + +  F S F+
Sbjct: 470 CKSICHSPMCPPYSAMTEWQHMVLSADK--TDLVFETVQQVHDVPFGSFFE 518


>06_03_1490 +
           30497980-30498102,30499034-30500156,30500914-30501132,
           30501228-30501454,30501810-30501884,30502250-30502321,
           30502765-30502863,30502975-30503046,30503131-30503245,
           30503455-30503523,30503625-30503952,30504320-30504437,
           30504522-30505448
          Length = 1188

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 185 VPPLRPNVPGPIESANTLTSANAPLIVPNPRPDT*AISSLLLPIS 51
           +P  R NV  P+ +A ++TS   P   P P   + AI     P+S
Sbjct: 92  IPAPRINVSTPLPNATSVTSPLQPTQAPRPAQQSLAIQGSQGPLS 136


>04_04_0236 + 23825368-23825763,23826229-23828667
          Length = 944

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 195 FCDKFCNDSLYDTTQHILEYIFFSGFDEKNYLKIL 299
           FCD  C D++Y T Q ++  + F G +      +L
Sbjct: 402 FCDVVCFDTVYLTYQFVIPLVAFLGINHHGQFVLL 436


>02_01_0127 -
          926333-926359,926637-926708,926928-927032,
          927129-927227,927298-927381,927462-927518,
          927596-927671,927755-927807,927899-927931,
          928100-928165,928556-928628,928721-928794,
          929177-929237,929354-929536,929656-929703,929810-929868
          Length = 389

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 7  LRKTEAGLKEISENHEIGSNKLEMAYVSG 93
          LR+  AGL +IS+N + G   L   Y+SG
Sbjct: 9  LREAVAGLSQISDNEKSGFISLVARYLSG 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,725,999
Number of Sequences: 37544
Number of extensions: 356602
Number of successful extensions: 882
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)