Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40522
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   2.8  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   4.9  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   8.6  

>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
 Frame = -1

Query: 702 SSGALVPAERRYGKLARITSVYLLIGIKKYFVDACFYQ----IVWPL*STTLTCNRLLS 538
           S  AL  +E  Y      TS+Y    +  + +D C Y     +VW     T+  N  LS
Sbjct: 217 SRSALAESEIEYDDNHVSTSIYFTFPVNSFSIDGCEYNNVKALVWTTTPWTIPSNLALS 275


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 218 CCLVRARGEVVDLRVEVCSPSQLYDIKLVFR 310
           C L+   GEV+   ++   P  LY  +L FR
Sbjct: 454 CTLIEVEGEVMRTSIKKGEPKILYPYQLAFR 484


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 701 PVVHSSLQSDAMANSRASQASTFSSE*KNISLMRVSIK 588
           P  H+S Q   M+NS ASQ      E +  +  R S++
Sbjct: 654 PAAHTSAQMQRMSNSFASQTKQVFGEQRTENSARESLR 691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,042
Number of Sequences: 5004
Number of extensions: 50549
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)