Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40520
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.0  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   2.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 334 SLQPTGNTVEMECMITNT 281
           S +P  NTVE  C++ NT
Sbjct: 473 STRPKSNTVENACVLKNT 490


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 200 PKSHNGSVY 226
           PK HNGS+Y
Sbjct: 31  PKDHNGSIY 39


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 248 GLICLAFDTQIHYVISANSTVVDNN 174
           G+IC A      YV++A   ++D N
Sbjct: 185 GMICGATIISKRYVLTAAHCIIDEN 209


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 150 HSTFLLRIFFYLLCHY 103
           H T LL++  YL C Y
Sbjct: 40  HPTTLLKLKRYLFCEY 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,205
Number of Sequences: 438
Number of extensions: 3244
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)