Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40517
         (540 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK223384-1|BAD97104.1|   96|Homo sapiens protein translocation c...    64   2e-10
L25085-1|AAA19706.1|   96|Homo sapiens Sec61-complex beta-subuni...    62   9e-10
CR542159-1|CAG46956.1|   96|Homo sapiens SEC61B protein.               62   9e-10
CR456883-1|CAG33164.1|   96|Homo sapiens SEC61B protein.               62   9e-10
BC001734-1|AAH01734.1|   96|Homo sapiens Sec61 beta subunit prot...    62   9e-10
AL137067-2|CAC08000.1|   96|Homo sapiens Sec61 beta subunit prot...    62   9e-10

>AK223384-1|BAD97104.1|   96|Homo sapiens protein translocation
           complex beta variant protein.
          Length = 96

 Score = 64.5 bits (150), Expect = 2e-10
 Identities = 29/43 (67%), Positives = 31/43 (72%)
 Frame = +2

Query: 251 RMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 379
           RMWRFYT+DS            MSLLFIASVFMLHIWGKYTR+
Sbjct: 54  RMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>L25085-1|AAA19706.1|   96|Homo sapiens Sec61-complex beta-subunit
           protein.
          Length = 96

 Score = 62.5 bits (145), Expect = 9e-10
 Identities = 28/42 (66%), Positives = 30/42 (71%)
 Frame = +2

Query: 254 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 379
           MWRFYT+DS            MSLLFIASVFMLHIWGKYTR+
Sbjct: 55  MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>CR542159-1|CAG46956.1|   96|Homo sapiens SEC61B protein.
          Length = 96

 Score = 62.5 bits (145), Expect = 9e-10
 Identities = 28/42 (66%), Positives = 30/42 (71%)
 Frame = +2

Query: 254 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 379
           MWRFYT+DS            MSLLFIASVFMLHIWGKYTR+
Sbjct: 55  MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>CR456883-1|CAG33164.1|   96|Homo sapiens SEC61B protein.
          Length = 96

 Score = 62.5 bits (145), Expect = 9e-10
 Identities = 28/42 (66%), Positives = 30/42 (71%)
 Frame = +2

Query: 254 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 379
           MWRFYT+DS            MSLLFIASVFMLHIWGKYTR+
Sbjct: 55  MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>BC001734-1|AAH01734.1|   96|Homo sapiens Sec61 beta subunit
           protein.
          Length = 96

 Score = 62.5 bits (145), Expect = 9e-10
 Identities = 28/42 (66%), Positives = 30/42 (71%)
 Frame = +2

Query: 254 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 379
           MWRFYT+DS            MSLLFIASVFMLHIWGKYTR+
Sbjct: 55  MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>AL137067-2|CAC08000.1|   96|Homo sapiens Sec61 beta subunit
           protein.
          Length = 96

 Score = 62.5 bits (145), Expect = 9e-10
 Identities = 28/42 (66%), Positives = 30/42 (71%)
 Frame = +2

Query: 254 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 379
           MWRFYT+DS            MSLLFIASVFMLHIWGKYTR+
Sbjct: 55  MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,350,708
Number of Sequences: 237096
Number of extensions: 1089566
Number of successful extensions: 1710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1710
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)