Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40514
         (744 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   3.4  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   3.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.9  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   7.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   7.9  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 476 YRFFFILLNFPPPTDFYLATTTFPHIT*FRSLTQPQPALGSDQL 345
           Y++  +  N P PT   +    FP  +   +L  P PA  S  L
Sbjct: 197 YKWMQVKRNVPKPTVPKIPPAEFPTTSSSSALESPNPASRSSCL 240


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 476 YRFFFILLNFPPPTDFYLATTTFPHIT*FRSLTQPQPALGSDQL 345
           Y++  +  N P PT   +    FP  +   +L  P PA  S  L
Sbjct: 197 YKWMQVKRNVPKPTVPKIPPAEFPTTSSSSALESPDPASRSSCL 240


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 142 LYSRLTNPFKKKQAYVQQMQVT 207
           LY+  T P  K++  +Q+MQ T
Sbjct: 302 LYNHSTIPLTKEEEELQEMQGT 323


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 470 FFFILLNFPPPTDFYLATT 414
           F+  L  FPPP  FY  T+
Sbjct: 199 FYQPLQPFPPPYPFYPGTS 217


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 722 FSNFVIYRPLWAKYS 678
           FSN+ IYRP   +Y+
Sbjct: 28  FSNWAIYRPGIGRYA 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,059
Number of Sequences: 336
Number of extensions: 3398
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)