Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40514
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    28   1.2  
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    25   8.6  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  

>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 608 AFRDYYFPVSKVLMKNFWGHVGYYYILP 691
           AF D++   + V + +FWG +GYY++ P
Sbjct: 183 AFADFF--KTGVFVLSFWGILGYYFLRP 208


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 694 FGQNIVVTNVPPEILHQNF 638
           FG NIV  N+P  +L Q++
Sbjct: 118 FGSNIVTHNIPVRVLSQSY 136


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = -1

Query: 504 VLLKTVAGNLSIF----FYLVKLSTAHRFLFSNNHFPPYNLVSIAHSAPARAG*RPTLRA 337
           +L +T+  N+ +F    F   +   A R L  N   P  N +  AH        +P+L  
Sbjct: 392 ILSQTINSNIVLFAPVVFQKFQEYMAVRLLNPNFELPESNGIEFAHEDSVLGHSKPSLTE 451

Query: 336 YDLIRGA*TLTSQFN 292
           +  I G  +L   +N
Sbjct: 452 FHAILGLYSLVISYN 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,022
Number of Sequences: 5004
Number of extensions: 57082
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)