Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40514
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    27   0.14 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.7  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   4.0  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 271 LYN--SISYIEL*RQSLCASYQIIGSQSW 351
           LYN  SI Y    +Q++C   +IIG +SW
Sbjct: 327 LYNLMSIKYRNAFKQTICCKTRIIGRRSW 355


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 700 AHFGQNIVVTNVPPEILH 647
           A F    VV  VPP++LH
Sbjct: 18  ARFNNQTVVDKVPPDMLH 35


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = +1

Query: 223 NYNYS*IIRYPA----YFLKLYNSISYIE 297
           NYNYS    Y      Y  KLY +I+YIE
Sbjct: 88  NYNYSNYNNYNNNYNNYNKKLYYNINYIE 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,694
Number of Sequences: 438
Number of extensions: 4221
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)