Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40512
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    30   0.29 
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    27   2.1  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    26   4.7  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   6.3  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    26   6.3  

>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 178 FRAQRNFYISGFALFLLVVIRR 243
           F AQRN Y+ G ALFL +V+ R
Sbjct: 98  FYAQRNLYLCGSALFLSLVVNR 119


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 573 NIYSSFLESPSPETVSFFCSLLAL 502
           +I  SFL+ PSP+  +F+ +L+AL
Sbjct: 643 SILFSFLDDPSPDNEAFYRALMAL 666


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 195 LLHIWLCTFPPCRHSSFGSNISQLATLLAQSEANF 299
           +LH  LC FPP     F  NI  LA+ +   E  F
Sbjct: 282 VLHTMLCGFPP----FFDENIKDLASKVVNGEFEF 312


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 304  WRKFASD*ANNVASCEIFEPNDE*RQGGKVQSQICRSFSVHETISCYLA 158
            WR FA    +NV +  I+E   + R+      Q C S S     SC+ A
Sbjct: 976  WRLFAVSAHSNVCAARIYEHMGQAREAEFFYRQAC-SISEKMPFSCFSA 1023


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 611 LNVVYAASSITVLIYSKSILILVCHCYL 694
           L+V Y+AS    L+Y+KS L+L   C +
Sbjct: 144 LSVDYSASQYMELLYTKSHLMLATACLI 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,321
Number of Sequences: 5004
Number of extensions: 44145
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)