Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40509
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   164   8e-42
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   164   1e-41
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   157   2e-39
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   4.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   5.4  
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    25   7.1  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    25   9.4  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   9.4  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  164 bits (399), Expect = 8e-42
 Identities = 79/160 (49%), Positives = 103/160 (64%)
 Frame = +3

Query: 15  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQR 194
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NI      +KLK +++LR   + 
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 195 DSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 374
           +     F F+ P+    +  RGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 375 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
               LKPGR YC VGRLS E+GWKY D+V KLE++RK K+
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKS 165


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  164 bits (398), Expect = 1e-41
 Identities = 79/160 (49%), Positives = 103/160 (64%)
 Frame = +3

Query: 15  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQR 194
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NI      +KLK +++LR   + 
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 195 DSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 374
           +     F F+ P+    +  RGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 375 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
               LKPGR YC VGRLS E+GWKY D+V KLE++RK K+
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKS 165


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  157 bits (380), Expect = 2e-39
 Identities = 73/160 (45%), Positives = 102/160 (63%)
 Frame = +3

Query: 15  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQR 194
           K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NI      +KLK +++LR   + 
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 195 DSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 374
           +     F F+ P+    +  RGM+PHKT RG  AL+ L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125

Query: 375 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
               LKP R YC +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 459  VRKLEDKRKGKAVKRVAMKRNLR 527
            V++L+D  KGKA K  A K+N R
Sbjct: 1100 VQELDDSSKGKAGKMPASKKNKR 1122


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 328 GHPSYVRSLLRAFLPRSVLCGIIP 257
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 420 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAMKRNL 524
           R SHE  +K++D ++K+ D      + R  +++NL
Sbjct: 27  RRSHEQTYKHQDAIKKVMDDIHRSNLLRQELEKNL 61


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 592 LDDGSEWCCRLRHLLTSILGDPLKFLFIATLLTAL 488
           L D  E   R+RH   S++G+P+ + +I   ++ L
Sbjct: 408 LPDRYEEASRVRHCALSLVGEPIFYPYINEFVSML 442


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 351 VDGYQREEGTHHMYVAS*EHSCHALFCVGSYLYSLP 244
           V+GYQ+EEG   + V S    C  +  + S  +SLP
Sbjct: 30  VEGYQKEEGKFKL-VLSILKQCIGVKDIASLRFSLP 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,336
Number of Sequences: 5004
Number of extensions: 53581
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)