Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40509
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 150 8e-37
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 150 8e-37
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 77 2e-14
11_04_0056 + 12942802-12942920,12943022-12943115 58 5e-09
07_01_1153 - 10842259-10842390,10843348-10845315 31 0.79
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 31 1.0
07_03_0257 + 15881279-15881339,15881649-15881675,15881860-15881957 30 1.4
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 29 2.4
07_01_0303 - 2171796-2172611,2173133-2174062,2174659-2175132,217... 29 4.2
03_06_0118 + 31795050-31796404,31796513-31797083 29 4.2
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424... 29 4.2
07_01_0231 - 1698244-1700154 28 5.6
07_01_1152 - 10837540-10839549 28 7.4
07_01_0223 - 1642553-1643676,1643725-1644541 27 9.7
07_01_0221 - 1635381-1637477 27 9.7
07_01_0215 - 1607473-1609494 27 9.7
04_03_0148 + 11869929-11869968,11870000-11870421 27 9.7
02_05_0090 - 25742533-25744557 27 9.7
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 150 bits (364), Expect = 8e-37
Identities = 74/172 (43%), Positives = 103/172 (59%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR* 182
G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ I L+ K+K + FLR
Sbjct: 6 GLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRK 65
Query: 183 EVQRDSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 362
+ F+ P+ RGMIPHKT RG+ AL L+ +DG PPP+D
Sbjct: 66 RMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVV 125
Query: 363 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAMKR 518
L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VA +R
Sbjct: 126 PDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KVAYER 175
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 150 bits (364), Expect = 8e-37
Identities = 72/158 (45%), Positives = 98/158 (62%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQRDS 200
+V+D R H+LGRLA++IAK LL G +VVVVRCE+I + L+ K+K + FLR +
Sbjct: 12 VVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 71
Query: 201 CSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 380
F++P RGMIPHKT+RG+ AL RL+ Y+G PPP+D
Sbjct: 72 SHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 131
Query: 381 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
L+PG YC +G+LS E+GW Y D +R+LE+KRK KA
Sbjct: 132 LRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA 169
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/82 (41%), Positives = 46/82 (56%)
Frame = +3
Query: 219 FKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPG 398
F++P RGMIPHKT+RG+ AL RL+ Y+ PP+D L+PG
Sbjct: 12 FRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPG 71
Query: 399 RNYCHVGRLSHEIGWKYRDVVR 464
YC +G+LS E+GW Y D +R
Sbjct: 72 HKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +3
Query: 282 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 449
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>07_01_1153 - 10842259-10842390,10843348-10845315
Length = 699
Score = 31.1 bits (67), Expect = 0.79
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 260 TSTVFHRILGWGFKLESPRAGITLHLLPQ 174
T V H +LGW F + SP + I L LP+
Sbjct: 250 TINVRHCVLGWSFAINSPASAINLGKLPK 278
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 411 HVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAM-KRNLRGSPRMLVR 551
H G E G +VVR L D +GKAV+R+ + R LR P L R
Sbjct: 165 HGGGGEEEAGVVDDEVVRVLRDAEEGKAVERLLLADRQLRHLPEQLGR 212
>07_03_0257 + 15881279-15881339,15881649-15881675,15881860-15881957
Length = 61
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 485 GQGC*ESCYEKKLKRITKDAGEKVSKATTPFTTIIQS 595
G G ESC +K + ITKD G+ P T+ +S
Sbjct: 12 GDGIPESCNDKMVNNITKDVGDFYDLFEGPMVTVSRS 48
>04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 544 W*EGVEGDNTIHYHHPILWIQLGLRNYNKNKPFG 645
W +G++ D + HHP L++ R Y K P G
Sbjct: 1055 WWDGLQWDGLENGHHPSLYVPTHSRYYKKKLPRG 1088
>07_01_0303 -
2171796-2172611,2173133-2174062,2174659-2175132,
2175569-2175609,2176298-2176337
Length = 766
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 185 LLPQE*HKLEFVLKKLPENVDLFAANHNNFVPFEKDLGDDCRQTA--QQMTTAIDHYGL 15
L P E ++E V+KK+PEN+ F+ + F + + QT + ID +GL
Sbjct: 176 LSPSETSRMESVMKKMPENLSGFSGFQSIENAFSTVVHNSLTQTVFENNWSKIIDKFGL 234
>03_06_0118 + 31795050-31796404,31796513-31797083
Length = 641
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 245 HRILGWGFKLESPRAGITLHLLPQ 174
H +LGW F ++ P I + +LP+
Sbjct: 259 HYVLGWSFAMDGPAPAIDIAMLPK 282
>03_05_0744 +
27336697-27337131,27337329-27337787,27340852-27342418,
27342641-27343044
Length = 954
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 450 RDVVRKLEDKRKGKAVKRVAMKRNLRGSPRMLVRRCRRRQHH 575
R + RK+++ + V+ +A + + G +VRRC RR++H
Sbjct: 117 RKIGRKIQELNR--RVEEIAKRSSRFGFVSQIVRRCHRRRYH 156
>07_01_0231 - 1698244-1700154
Length = 636
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 257 STVFHRILGWGFKLESPRAGITLHLLPQ 174
ST H +LGW F + SP I LP+
Sbjct: 252 STAHHYVLGWSFGMNSPAPTIDSTKLPK 279
>07_01_1152 - 10837540-10839549
Length = 669
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 245 HRILGWGFKLESPRAGITLHLLPQ 174
H +LGW F + SP I + LP+
Sbjct: 255 HCVLGWSFAMNSPAPAIDISRLPK 278
>07_01_0223 - 1642553-1643676,1643725-1644541
Length = 646
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 245 HRILGWGFKLESPRAGITLHLLPQ 174
H +LGW F + SP I + LP+
Sbjct: 248 HYVLGWSFGMNSPAPSIDIAKLPR 271
>07_01_0221 - 1635381-1637477
Length = 698
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 245 HRILGWGFKLESPRAGITLHLLPQ 174
H +LGW F ++ P I + LP+
Sbjct: 282 HYVLGWSFAMDGPAPAIDIDKLPK 305
>07_01_0215 - 1607473-1609494
Length = 673
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 245 HRILGWGFKLESPRAGITLHLLPQ 174
H +LGW F++ P I + LP+
Sbjct: 250 HCVLGWSFRMNGPAQAIDISRLPK 273
>04_03_0148 + 11869929-11869968,11870000-11870421
Length = 153
Score = 27.5 bits (58), Expect = 9.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 28 SMAVVICWAVWRQSSPRSF 84
S+ ++ICW VW++ + R F
Sbjct: 99 SLVLLICWMVWKERNARVF 117
>02_05_0090 - 25742533-25744557
Length = 674
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 245 HRILGWGFKLESPRAGITLHLLPQE*HKLEFVLKKLPENV 126
H +L W FK++ P + + LP L + + P NV
Sbjct: 264 HYVLAWSFKMDGPAPSLNVSKLP----ALPVTIARAPSNV 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,210,723
Number of Sequences: 37544
Number of extensions: 378657
Number of successful extensions: 1069
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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