Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40506
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   3.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.5  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    26   6.0  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   6.0  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   7.9  

>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 507 ACTLSKYHIPENVGVTFILSVSSRSNTELFLVHCQVSI*CSFW 379
           A  LSKYHI + +  T IL+ + R    + L +  V++  S W
Sbjct: 505 AAALSKYHIAKRL-ATSILAHAGRKPRSVLLTNMFVAMFASMW 546


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 637 YCFCHNLLVIVPLNL-LKSKASNLYVLL 557
           + +CH+LL IVP  L +K  +S L+VL+
Sbjct: 328 WVWCHSLLYIVPKTLPIKPLSSLLFVLI 355


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 588  NQRLPICTFFSHNVDITKVSRFRESPPA 505
            +Q +   TF  HN +IT++S+ + +PPA
Sbjct: 1419 SQTVLTATFNPHNQNITQLSQLQLAPPA 1446


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 37  MDALNASATNKKEPKKRKRRTSGSKD 114
           M+A+N  A  K+E  +R+ RT GSKD
Sbjct: 214 MNAINLVA--KRELSRRQNRTDGSKD 237


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 211 YLGKTLAVQIYFRLWDY*VMSV*VEVIRH*DCHPSIRSYAFFFSL 77
           +LG  +A +I+F  WD+ ++        H +  P I S+    SL
Sbjct: 229 FLGSLIAHEIHFLPWDFNMLCSNSVQSAHTNLQPDITSFVAILSL 273


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 608 SPPKSTKIKGFQFVRSSPITSTLQR 534
           +P K++K  G Q + SSP TSTL R
Sbjct: 282 NPTKNSKPAG-QVIPSSPFTSTLSR 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,652
Number of Sequences: 5004
Number of extensions: 56514
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)