Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40506
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.53 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 50  MLQRQIRRNQRKEKGVRADRRMAILMTDHLHLHRHHSVVPQAKVNLYRQ 196
           +++R +  ++R  K V  D+        H  LH H S  PQA+     Q
Sbjct: 787 VMRRLMSEDKRLSKSVNGDQSQP----PHQQLHHHQSTHPQAQAQAQPQ 831


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 672 YFLS*CLYIFLFTVFAIIY 616
           Y LS CLY F  T+  I+Y
Sbjct: 310 YILSGCLYYFSTTINPILY 328


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 672 YFLS*CLYIFLFTVFAIIYL**SP*IY*NQRLPICTFFSHNVDITK--VSRFRESPPAC 502
           Y L+ CLY F  T+  I+Y   S   Y N     C     N  IT+  +S  R+S   C
Sbjct: 298 YPLTGCLYYFSTTINPILYNVMSA-KYRNAFKETCRCSPSNPSITRTGLSSVRDSSIIC 355


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 405 DSELETILYLTW 440
           DS +  ILYLTW
Sbjct: 802 DSVIPRILYLTW 813


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 582 RLPICTFFSHNVDITKVSRF 523
           R+P+ +FFS + +++   RF
Sbjct: 235 RIPLVSFFSTSPELSNKQRF 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,731
Number of Sequences: 438
Number of extensions: 4247
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)