Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40500
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    29   1.2  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    28   1.5  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    27   4.7  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    27   4.7  
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.2  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    26   6.2  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   8.2  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   8.2  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 808 DTQIVRGDIQRITKDARNVFSVKNALVH-CTATPLYLKLSILLLANENNVSS 656
           D+ I  GD+QR+T+    +   KNA  +   A+PL+  L+ ++   E+ VSS
Sbjct: 780 DSHIFDGDVQRLTR-ILELLETKNAASYPKLASPLFEVLNSVIALKEDIVSS 830


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 542 YIAIDDTYTFQKAVPEHCTSLAVVGDLKNFLGK 444
           Y AI +    +KA+  HC +LA  G+L   LG+
Sbjct: 163 YRAITEKQVVEKAILSHCHALANAGELVMVLGQ 195


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 636 IEAILGNEDTLFSFANNKIESLRYKGVAVQCTS 734
           IE  LGNE  +      ++E LRY    V+C S
Sbjct: 273 IEEDLGNEFDMVKLRQYQLERLRYYYAVVECDS 305


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 443 LYQGSSSDHRPLLTKCNAPV 502
           LY+  + DH PL+ KC A V
Sbjct: 17  LYKDDTLDHTPLIPKCRAQV 36


>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 374 EMNCSLSQSFTLNF*SEDAFCNIGQSRTTLTSLQFCTV 261
           ++NC  S S+T++F    A+ NI  S   LT    CTV
Sbjct: 43  DVNCKGSTSYTISFNKCQAYPNI-NSINALTDGAVCTV 79


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 302 QSRTTLTSLQFCTVKLLYHPCNSPLDV 222
           QSR  LT  ++ ++K +Y   NSP D+
Sbjct: 92  QSRDALTDYRYKSMKGIYSEANSPADL 118


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 728 YQCVLHGKHISRVLSNSLNVTADNLSVVGNNSTGQRSDTGSFEHRISKNEF 880
           Y  + +   + RVL  + +  +  LSV    ST  ++DT S E    K+ F
Sbjct: 142 YGFIFNENSVPRVLKKAPSTHSPQLSVPSKTSTIDKTDTRSTEKTKGKDIF 192


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 343 VKDCDKLQFISLSNNSPVQTPPEVTIENVKEVVSLPRKFFRSPTTANEVQCSGTAF*K 516
           +KD +K   +  SNN  + TP +     VK + S    F +S    N      T+F K
Sbjct: 444 IKDKNKDSTVRASNNENIPTPDKQASPFVKNLSSTSSPFSQSSAFGNFKFGQATSFDK 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,449,185
Number of Sequences: 5004
Number of extensions: 71870
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)