Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40498
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.72
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 2.9
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 3.8
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 26 5.1
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 25 6.7
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.7
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 25 6.7
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 25 8.8
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 25 8.8
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 25 8.8
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.72
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -3
Query: 288 SWPAWCTNSYVMESPLSHLCIPSFCKTASS-H*SMSLGKNTSQFSTSLGRKEIIFASQES 112
S P+ ++S + S LS IPS ++SS S+S ++S S+S II +S S
Sbjct: 220 SSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSS 279
Query: 111 SS 106
SS
Sbjct: 280 SS 281
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 273 CTNSYVMESPLSHLCIPSFCK 211
CT+SY + PL H C PSF +
Sbjct: 77 CTDSY--QYPLKHSCTPSFLR 95
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 335 KKKSAHVHLR*FYILCLKYIITQTIEVRQRCLCFKTN 445
+K+S + H R F+ + LK ++ + C+KTN
Sbjct: 35 RKRSHYFHFRRFWTIWLKSLVIMVLLFTHIYDCYKTN 71
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 136 NNFCITRVVFGQGQCFLCVCVYSVICVECVGPVD 35
NN + + FG+G FL +Y+ C + G +D
Sbjct: 415 NNLFLKDLKFGEGDGFLNYYIYNYNCPKIPGGID 448
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 119 CDAKIISFLPSEVENCDVFLPKLIDQCDDAVLQK 220
CDAK++ + C V+ + ++ DA+LQK
Sbjct: 49 CDAKVVVMIFDSKNACHVYSSEEPEEQRDALLQK 82
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -2
Query: 160 FDFTWQERNNFCITRVVFGQGQCFLCVCVYSV 65
+D +WQ+ F + R QC LC+ Y +
Sbjct: 267 YDASWQKLLEFGLDRSHLTSVQCLLCLGYYDI 298
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 379 QNIELP*MHVSTFLFLIARRN 317
QN +LP HV FLF IA R+
Sbjct: 264 QNQQLPLQHVYAFLFSIAYRD 284
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 8.8
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +1
Query: 271 TPSWPADAISTPEVLSYVEQLEKEKCSRAFKVVLYFVLKIHNNTDHRGSTKMLMF*N*CL 450
T +PA P + V+++EK+ S K +++ K+ + H S L+F
Sbjct: 147 TVYYPAILDLLPVLSDLVKEMEKDPASLQAKENEFWLKKLIQTSLHHSSDNSLVF----Y 202
Query: 451 LQDFIQPLALRNRI 492
L+ + L LRN I
Sbjct: 203 LEMLLDSLDLRNCI 216
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 575 GLSHSSNLIYNCYFHIEVKLVMHTIEATILFLKAS 471
GL NL +CY + ++ ++HT E T FL S
Sbjct: 277 GLCGLYNLGNSCYMNSALQCMIHTHELTKYFLSDS 311
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 152 EVENCDVFLPKLIDQCDDAVLQKEGM-HKCE 241
E+E ++ IDQC DA +Q + M + CE
Sbjct: 471 EIEGEQIYEEVSIDQCLDATIQPDQMEYTCE 501
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,771
Number of Sequences: 5004
Number of extensions: 49533
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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