Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40498
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979...    28   6.9  
12_02_0383 + 18401880-18403034                                         27   9.1  

>04_03_0809 +
           19896801-19897170,19897265-19897513,19897850-19897900,
           19898007-19898267,19898427-19898479,19898746-19898887,
           19898972-19899226,19899616-19900640
          Length = 801

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 460 NLVVNISFKT*ASLSNLYGLC 398
           +++V I+F+T  S+ N YG+C
Sbjct: 443 SIIVTIAFRTTTSIGNAYGIC 463


>12_02_0383 + 18401880-18403034
          Length = 384

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 253 HDVGIRTPSWPADAISTPEVLSYV 324
           HDV ++   W  D  STPE ++++
Sbjct: 73  HDVAVKVLDWREDGYSTPEQIAHL 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,939,551
Number of Sequences: 37544
Number of extensions: 279388
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)