Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40498
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 43  PVDWFWISPGI 11
           P DW WI P I
Sbjct: 384 PADWLWIVPPI 394


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 78  QTHKKHCP*PKTT 116
           QTH + CP P++T
Sbjct: 376 QTHSQLCPTPRST 388


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -3

Query: 183 LGKNTSQFSTSLGRKEIIFASQESSSVKGNVFCVS 79
           LG N + F T+L     +   Q  S  +    C++
Sbjct: 163 LGNNLTAFLTTLDGVNDVVQHQSGSEAEAEFVCIA 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,672
Number of Sequences: 438
Number of extensions: 3227
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)