Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40496
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 36 0.057
06_01_0172 + 1362101-1363708 31 1.2
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 1.2
02_04_0452 + 23044190-23045227 30 2.1
11_02_0015 - 7355989-7357092 30 2.8
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 3.7
07_01_0776 + 5983684-5983857,5983962-5984072,5984151-5984302,598... 29 4.9
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 29 4.9
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 29 6.5
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251... 29 6.5
11_06_0222 - 21413676-21413696,21413813-21413896,21414042-214143... 28 8.6
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 8.6
02_02_0258 - 8374442-8375083 28 8.6
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 35.5 bits (78), Expect = 0.057
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +1
Query: 271 VEIESPGILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVYYVGVCTGW 441
V++ G+ ++ +W+ G+IS GR W DP+P V YVG+ +
Sbjct: 88 VDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQYVGLSSWD 147
Query: 442 GATGSWKIEVPPTAPVAAALYA 507
G I + P+AP + L++
Sbjct: 148 KHVGYRNISLMPSAPQNSILWS 169
>06_01_0172 + 1362101-1363708
Length = 535
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 275 KLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYPGL--IPNLSQFTTSESAQAGVP 448
KL L NI++ G VGI LDA +K+ PGL P++ +TT SA G
Sbjct: 186 KLYITPNLVSCNILLKGLVGIG---DLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKG 242
Query: 449 QAPGKSK 469
G K
Sbjct: 243 DIEGAQK 249
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 295 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 405
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>02_04_0452 + 23044190-23045227
Length = 345
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 406 FPVYYVGVCTGWGATGSWK-IEVPPTAPVAAALYADPLATL 525
FPV G G G W + +PP AAA + PL TL
Sbjct: 114 FPVPAAAGFPGGGGGGCWPWVNIPPQGAAAAASHQQPLNTL 154
>11_02_0015 - 7355989-7357092
Length = 367
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +2
Query: 245 RKNKPSP-----IRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHS 382
R+ KP P +RL LKA ++ T+ G + ALS LD RV F S
Sbjct: 13 RRTKPKPPMSRLMRLSLKAVDWATDATRRADGTLNRLALSVLDPRVPAFSS 63
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 283 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 420
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>07_01_0776 +
5983684-5983857,5983962-5984072,5984151-5984302,
5984403-5984460,5984568-5984616,5984714-5984958,
5985129-5985206,5986016-5986246
Length = 365
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 397 PEPFPVYYVGVCTGWGATGSWKIEVP-PTAPVAAALYA 507
P PFP+Y+ G + A S VP PTA AA A
Sbjct: 73 PVPFPMYHPGAAAAYYAHASMAAGVPYPTAEAMAAAAA 110
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 308 NIVVFGFVGIAALSPLDARVKLFHSY-PGLIPNLSQFTTSESAQAGVPQAPGKSKCHRL 481
N VVF V I ++ +++LF P N QF T E ++G+PQ + HR+
Sbjct: 36 NPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRV 94
>06_01_0497 +
3555919-3557154,3557815-3558143,3558177-3558775,
3558919-3560393
Length = 1212
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +2
Query: 518 LPWRLRRKRTPSVWRSRYMG*CFRRSSTSWRRCGRTGLLR--RAPVCGSCCSRRCHDPW 688
L WR RR+ + R G R + + R G G+ + R P CG RRC PW
Sbjct: 549 LSWRSRRREEETARRGESGGRGAVRCALGFLRRGGGGVGQWPRQPTCG----RRCRRPW 603
>03_05_1060 -
30023407-30023553,30024274-30024390,30024958-30025129,
30026116-30026198,30026299-30026917,30027157-30027280,
30027637-30027745,30028214-30028399,30028716-30028763,
30028808-30028979,30029034-30029209
Length = 650
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 424 GVCTGWGATGSWKIEVPPTAPVAAALYADPLATLEAT 534
GV G G+ + +PP AP AAA+ + P+ + E T
Sbjct: 422 GVLHGKAHEGAPSMALPPPAPSAAAMLSPPVPSKERT 458
>11_06_0222 -
21413676-21413696,21413813-21413896,21414042-21414305,
21414495-21414592,21414691-21414796,21414872-21414960,
21415048-21415170,21415379-21415566,21416069-21416172,
21416743-21416838,21417061-21417159
Length = 423
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 451 GSWKIEVPPTAPVAAALYADPLATLEATEETHPLR---LEEPVYGLMFQEVKYLLAPLWE 621
GS KI P DPL LEAT + H ++ + ++F E K L+ LW+
Sbjct: 128 GSGKIITAPIITEDGKPIKDPLVLLEATSDQHTMQGLDVLRTDRSMVFYENKENLSKLWD 187
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 323 GFVGIAALSPLDA-RVKLFHSYPGLIPNLSQFTTSESAQAGVPQAPGKS 466
G +G+ S D+ +K S P L PNLS T++E + VP+ P S
Sbjct: 1515 GKLGLPNFSLEDSIPLKHLKSVPDLFPNLSLGTSNEYLRNCVPELPNSS 1563
>02_02_0258 - 8374442-8375083
Length = 213
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 629 LLRRAPVCGSCCSRRCHDPW 688
+++R PVC RRC DPW
Sbjct: 169 MVKRLPVCLHMFHRRCIDPW 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,754,156
Number of Sequences: 37544
Number of extensions: 628680
Number of successful extensions: 2012
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2012
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -