Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40496
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   4.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   4.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.6  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 877 GGHGQCIKFSIFSFSTGEC 821
           GG G+C    IFS   G C
Sbjct: 32  GGRGKCPSNEIFSRCDGRC 50


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 877 GGHGQCIKFSIFSFSTGEC 821
           GG G+C    IFS   G C
Sbjct: 32  GGRGKCPSNEIFSRCDGRC 50


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 727 GVVLNMESLNTRLSRRPKQLGSYQWIQRPARCIPRWRN*R 846
           G  +N+E+      R P Q GS+ + +R    I +W + R
Sbjct: 129 GCPMNLENFPMDTQRCPLQFGSFGYTKRDV--IYKWNSAR 166


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 363  LASSGDNAAIPTNPKTTIFPSVK 295
            +ASS  N    T   TTI P VK
Sbjct: 949  VASSASNVTNVTTNLTTILPPVK 971


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,856
Number of Sequences: 438
Number of extensions: 6289
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)